PDB entry 6thn
View 6thn on RCSB PDB site
Description: Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E symmetry expansion+2fold focused classification
Class: virus
Keywords: BEV1, enterovirus, picornavirus, RNA, VIRUS
Deposited on
2019-11-20, released
2020-12-09
The last revision prior to the SCOPe 2.07 freeze date was dated
2020-12-09, with a file datestamp of
2020-12-04.
Experiment type: EM
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain '1':
Compound: Genome polyprotein
Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
Database cross-references and differences (RAF-indexed):
- Uniprot P12915 (Start-280)
- conflict (93)
- conflict (236)
Domains in SCOPe 2.07: d6thn1_ - Chain '2':
Compound: Genome polyprotein
Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
Database cross-references and differences (RAF-indexed):
- Chain '3':
Compound: Genome polyprotein
Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
Database cross-references and differences (RAF-indexed):
- Uniprot P12915 (0-241)
- conflict (31)
- conflict (153)
Domains in SCOPe 2.07: d6thn3_ - Chain '4':
Compound: Genome polyprotein
Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
Database cross-references and differences (RAF-indexed):
- Uniprot P12915 (0-51)
- conflict (0)
- conflict (2)
- Chain 'A':
Compound: RNA Peak 9 Bernoulli Plot
Species: Bovine enterovirus strain VG-5-27 [TaxId:12065]
- Heterogens: MYR, SO4, HOH
PDB Chain Sequences:
- Chain '1':
Sequence, based on SEQRES records: (download)
>6thn1 (1:)
ndpgkmlkdaidkqvagalvagtttsthsvatdstpalqaaetgatstardesmietrti
vpthgihetsvesffgrsslvgmpllatgtsithwridfrefvqlrakmswftymrfdve
ftiiatsstgqnvtteqhttyqvmyvppgapvpsnqdsfqwqsgcnpsvfadtdgppaqf
svpfmssanaystvydgyarfmdtdpdrygilpsnflgfmyfrtledaahqvrfriyaki
khtscwipraprqapykkrynlvfsgdsdricsnrasltsy
Sequence, based on observed residues (ATOM records): (download)
>6thn1 (1:)
gkmlkdaidkqvagalvagtttsthsvatdstpalqaaetgatstardesmietrtivpt
hgihetsvesffgrsslvgmpllatgtsithwridfrefvqlrakmswftymrfdvefti
iatsstgqnvtteqhttyqvmyvppgapvpsnqdsfqwqsgcnpsvfadtdgppaqfsvp
fmssanaystvydgyarfmdtdpdrygilpsnflgfmyfrtledaahqvrfriyakikht
scwipraprqapykkrynlvfsgdsdricsnrasltsy
- Chain '2':
No sequence available.
- Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)
>6thn3 (3:)
glptkpgpgsyqfmttdedcspcilpdfqptpeifipgkvnnlleiaqvesileannreg
vegveryvipvsvqdaldaqiyalrlelggsgplsssllgtlakhytqwsgsveitcmft
gtfmttgkvllaytppggdmprnreeamlgthviwdfglqssitlvipwisashfrgvsn
ddvlnyqyyaaghvtiwyqtnmvippgfpntagiimmiaaqpnfsfriqkdredmtqtai
lq
- Chain '4':
No sequence available.
- Chain 'A':
No sequence available.