PDB entry 6thn

View 6thn on RCSB PDB site
Description: Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E symmetry expansion+2fold focused classification
Class: virus
Keywords: BEV1, enterovirus, picornavirus, RNA, VIRUS
Deposited on 2019-11-20, released 2020-12-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-12-09, with a file datestamp of 2020-12-04.
Experiment type: EM
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (Start-280)
      • conflict (93)
      • conflict (236)
    Domains in SCOPe 2.07: d6thn1_
  • Chain '2':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (Start-247)
      • conflict (61)
  • Chain '3':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (0-241)
      • conflict (31)
      • conflict (153)
    Domains in SCOPe 2.07: d6thn3_
  • Chain '4':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (0-51)
      • conflict (0)
      • conflict (2)
  • Chain 'A':
    Compound: RNA Peak 9 Bernoulli Plot
    Species: Bovine enterovirus strain VG-5-27 [TaxId:12065]
  • Heterogens: MYR, SO4, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download)
    >6thn1 (1:)
    ndpgkmlkdaidkqvagalvagtttsthsvatdstpalqaaetgatstardesmietrti
    vpthgihetsvesffgrsslvgmpllatgtsithwridfrefvqlrakmswftymrfdve
    ftiiatsstgqnvtteqhttyqvmyvppgapvpsnqdsfqwqsgcnpsvfadtdgppaqf
    svpfmssanaystvydgyarfmdtdpdrygilpsnflgfmyfrtledaahqvrfriyaki
    khtscwipraprqapykkrynlvfsgdsdricsnrasltsy
    

    Sequence, based on observed residues (ATOM records): (download)
    >6thn1 (1:)
    gkmlkdaidkqvagalvagtttsthsvatdstpalqaaetgatstardesmietrtivpt
    hgihetsvesffgrsslvgmpllatgtsithwridfrefvqlrakmswftymrfdvefti
    iatsstgqnvtteqhttyqvmyvppgapvpsnqdsfqwqsgcnpsvfadtdgppaqfsvp
    fmssanaystvydgyarfmdtdpdrygilpsnflgfmyfrtledaahqvrfriyakikht
    scwipraprqapykkrynlvfsgdsdricsnrasltsy
    

  • Chain '2':
    No sequence available.

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6thn3 (3:)
    glptkpgpgsyqfmttdedcspcilpdfqptpeifipgkvnnlleiaqvesileannreg
    vegveryvipvsvqdaldaqiyalrlelggsgplsssllgtlakhytqwsgsveitcmft
    gtfmttgkvllaytppggdmprnreeamlgthviwdfglqssitlvipwisashfrgvsn
    ddvlnyqyyaaghvtiwyqtnmvippgfpntagiimmiaaqpnfsfriqkdredmtqtai
    lq
    

  • Chain '4':
    No sequence available.

  • Chain 'A':
    No sequence available.