PDB entry 6thd

View 6thd on RCSB PDB site
Description: Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E
Class: virus
Keywords: BEV1, enterovirus, picornavirus, RNA, VIRUS
Deposited on 2019-11-19, released 2020-12-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-12-09, with a file datestamp of 2020-12-04.
Experiment type: EM
Resolution: 2.23 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (Start-280)
      • conflict (93)
      • conflict (236)
    Domains in SCOPe 2.07: d6thd1_
  • Chain '2':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (Start-247)
      • conflict (61)
  • Chain '3':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (0-241)
      • conflict (31)
      • conflict (153)
    Domains in SCOPe 2.07: d6thd3_
  • Chain '4':
    Compound: Genome polyprotein
    Species: Bovine enterovirus (strain VG-5-27) [TaxId:12065]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12915 (0-51)
      • conflict (0)
      • conflict (2)
  • Heterogens: MYR, SO4, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >6thd1 (1:)
ndpgkmlkdaidkqvagalvagtttsthsvatdstpalqaaetgatstardesmietrti
vpthgihetsvesffgrsslvgmpllatgtsithwridfrefvqlrakmswftymrfdve
ftiiatsstgqnvtteqhttyqvmyvppgapvpsnqdsfqwqsgcnpsvfadtdgppaqf
svpfmssanaystvydgyarfmdtdpdrygilpsnflgfmyfrtledaahqvrfriyaki
khtscwipraprqapykkrynlvfsgdsdricsnrasltsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6thd1 (1:)
gkmlkdaidkqvagalvagtttsthsvatdstpalqaaetgatstardesmietrtivpt
hgihetsvesffgrsslvgmpllatgtsithwridfrefvqlrakmswftymrfdvefti
iatsstgqnvtteqhttyqvmyvppgapvpsnqdsfqwqsgcnpsvfadtdgppaqfsvp
fmssanaystvydgyarfmdtdpdrygilpsnflgfmyfrtledaahqvrfriyakikht
scwipraprqapykkrynlvfsgdsdricsnrasltsy

  • Chain '2':
    No sequence available.

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6thd3 (3:)
glptkpgpgsyqfmttdedcspcilpdfqptpeifipgkvnnlleiaqvesileannreg
vegveryvipvsvqdaldaqiyalrlelggsgplsssllgtlakhytqwsgsveitcmft
gtfmttgkvllaytppggdmprnreeamlgthviwdfglqssitlvipwisashfrgvsn
ddvlnyqyyaaghvtiwyqtnmvippgfpntagiimmiaaqpnfsfriqkdredmtqtai
lq

  • Chain '4':
    No sequence available.