PDB entry 6tep

View 6tep on RCSB PDB site
Description: crystal structure of a galactokinase from bifidobacterium infantis in complex with adp
Deposited on 2019-11-12, released 2020-06-10
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Galactokinase
    Species: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) [TaxId:391904]
    Gene: Blon_2062
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7GUI0 (0-415)
      • expression tag (416)
  • Chain 'B':
    Compound: Galactokinase
    Species: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) [TaxId:391904]
    Gene: Blon_2062
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7GUI0 (0-415)
      • expression tag (416)
  • Chain 'C':
    Compound: Galactokinase
    Species: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) [TaxId:391904]
    Gene: Blon_2062
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7GUI0 (0-415)
      • expression tag (416-418)
  • Chain 'D':
    Compound: Galactokinase
    Species: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) [TaxId:391904]
    Gene: Blon_2062
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7GUI0 (Start-415)
      • expression tag (416)
  • Heterogens: ADP, PEG, GOL, CL, MG, PG4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6tepA (A:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hqlndgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrv
rhvvteiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngay
garmtgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreaklaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6tepA (A:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hqgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrvrhv
vteiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngaygar
mtgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreak

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6tepB (B:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hqlndgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrv
rhvvteiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngay
garmtgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreaklaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6tepB (B:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hqndgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrvr
hvvteiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngayg
armtgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreak

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6tepC (C:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hqlndgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrv
rhvvteiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngay
garmtgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreaklaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6tepC (C:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrvrhvv
teiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngaygarm
tgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreakla

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6tepD (D:)
mtavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpial
phrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfd
kvkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksen
emagastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqap
hqlndgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrv
rhvvteiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngay
garmtgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreaklaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6tepD (D:)
tavefiepltheegvsqatklfvdtygaapegvwaapgrvnligehtdynaglclpialp
hrtfialkpredtkvrvvsgvapdkvaeadldglkargvdgwsayptgvawalrqagfdk
vkgfdaafvscvplgsglsssaamtcstalalddvyglgygdsdagrvtlinaaiksene
magastggldqnasmrcteghallldcrpeltplenvsqqefdldkynlellvvdtqaph
qgqyaqrratceeaakilgvanlrvtadgiskaddqfqalketldalpdetmkkrvrhvv
teiervrsfvrafaqgdikaagrlfnashdslaadyevtvpeldiavdvarkngaygarm
tgggfggsiialvdkgqgheiaqkiadrfekegfnapralpafaaasasreak