PDB entry 6te9

View 6te9 on RCSB PDB site
Description: neck of native gta particle computed with c6 symmetry
Deposited on 2019-11-11, released 2020-07-22
The last revision was dated 2020-07-22, with a file datestamp of 2020-07-17.
Experiment type: EM
Resolution: 3.58 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phage portal protein, HK97 family
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Phage portal protein, HK97 family
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Adaptor protein Rcc01688
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Adaptor protein Rcc01688
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Stopper protein Rcc01689
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Tail terminator protein Rcc01690
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Phage major tail protein, TP901-1 family
    Species: RHODOBACTER CAPSULATUS [TaxId:1061]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6te9A (A:)
mglnffrkaapevrtepvaerkasvtgrivamasgagrpvwgprdtvslmrtgfagnpvg
frsvkliaeataavplicqdaerryeihpvldllrrpnagqgraelfealigqillsgng
yleavcpepgvprelhvlrsdrmavvpgadgwpvgydytvggrkhrfdmtghpdpichik
sfhptddhyglspmqaaavaldvhnaasawskalldnaarpsgaiiykgadgqgvlapeq
yerlifemethhqgarnagrpmlleggldwkpmgfspsdmefhetkaaaareialafgvp
pmligipgdatyanyaeanrafyrltvlplltrvsaalawwlsgylgaqielkpdldqvp
alaverdqlwarigaagflsnsekrvllglpptaeg

    Sequence, based on observed residues (ATOM records):
    >6te9A (A:)
svtgrivamasgagrpvwgprdtvslmrtgfagnpvgfrsvkliaeataavplicpvldl
lrrpnagqgraelfealigqillsgngyleavcpepgvprelhvlrsdrmavvpgadgwp
vgydytvggrkhrfdmtghpdpichiksfhptddhyglspmqaaavaldvhnaasawska
lldnaarpsgaiiykgadgqgvlapeqyerlifemethhqgarnagrpmlleggldwkpm
gfspsdmefhetkaaaareialafgvppmligipgdatyanyaeanrafyrltvlplltr
vsaalawwlsgylgaqielkpdldqvpalaverdqlwarigaagflsnsekrvllglppt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6te9B (B:)
mglnffrkaapevrtepvaerkasvtgrivamasgagrpvwgprdtvslmrtgfagnpvg
frsvkliaeataavplicqdaerryeihpvldllrrpnagqgraelfealigqillsgng
yleavcpepgvprelhvlrsdrmavvpgadgwpvgydytvggrkhrfdmtghpdpichik
sfhptddhyglspmqaaavaldvhnaasawskalldnaarpsgaiiykgadgqgvlapeq
yerlifemethhqgarnagrpmlleggldwkpmgfspsdmefhetkaaaareialafgvp
pmligipgdatyanyaeanrafyrltvlplltrvsaalawwlsgylgaqielkpdldqvp
alaverdqlwarigaagflsnsekrvllglpptaeg

    Sequence, based on observed residues (ATOM records):
    >6te9B (B:)
svtgrivamasgagrpvwgprdtvslmrtgfagnpvgfrsvkliaeataavplicpvldl
lrrpnagqgraelfealigqillsgngyleavcpepgvprelhvlrsdrmavvpgadgwp
vgydytvggrkhrfdmtghpdpichiksfhptddhyglspmqaaavaldvhnaasawska
lldnaarpsgaiiykgadgqgvlapeqyerlifemethhqgarnagrpmlleggldwkpm
gfspsdmefhetkaaaareialafgvppmligipgdatyanyaeanrafyrltvlplltr
vsaalawwlsgylgaqielkpdldqvpalaverdqlwarigaagflsnsekrvllglppt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6te9C (C:)
mmlnevtavpgtalpvaefrdhlrlgtgfadlgaedaallsylraaiaaiegrtakalis
rgfrlaltawrwgdmqtlpiapvatvtalrlvdaagvetpvaagwrlvpdmarpriealg
amlpmiptggrveidftagfgaswsalpvdlaqavfllaaqyyelrhdgaaeggampfgv
malierwrtvrvlggrp

    Sequence, based on observed residues (ATOM records):
    >6te9C (C:)
mmlnevtavpgtalpvaefrdhlrlgtgfadlgaedaallsylraaiaaiegrtakalis
rgfrlaltawrwgdmqtlpiapvatvtalrlvdaagvetpvaagwrlvpdmarpriealg
amlpmiptggrveidftagfgaswsalpvdlaqavfllaaqyyelrhdgaaampfgvmal
ierwrtvrvlggrp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6te9D (D:)
mmlnevtavpgtalpvaefrdhlrlgtgfadlgaedaallsylraaiaaiegrtakalis
rgfrlaltawrwgdmqtlpiapvatvtalrlvdaagvetpvaagwrlvpdmarpriealg
amlpmiptggrveidftagfgaswsalpvdlaqavfllaaqyyelrhdgaaeggampfgv
malierwrtvrvlggrp

    Sequence, based on observed residues (ATOM records):
    >6te9D (D:)
mmlnevtavpgtalpvaefrdhlrlgtgfadlgaedaallsylraaiaaiegrtakalis
rgfrlaltawrwgdmqtlpiapvatvtalrlvdaagvetpvaagwrlvpdmarpriealg
amlpmiptggrveidftagfgaswsalpvdlaqavfllaaqyyelrhdgaaampfgvmal
ierwrtvrvlggrp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6te9E (E:)
msrprlnrllvleeavrvadgagghrldwqakgevwaevtagsgseragefvtlasvpft
ivvraapvgaarrprpeqrfregarifrilavaerdreghylscfareevva

    Sequence, based on observed residues (ATOM records):
    >6te9E (E:)
rprlnrllvleeavrvadgagghrldwqakgevwaevtagsgseragefvtlasvpftiv
vraapvgaarrprpeqrfregarifrilavaerdreghylscfareevva

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6te9F (F:)
msyavagalqaavyqqlradavlaalvgtavydavppgplagtyvslgpedvadasdktg
agavhdfvisvitdaagfatakaaaaavsdalvgadlvlsrgrlvglwflrakarrveka
dmrridlvfrarveg

    Sequence, based on observed residues (ATOM records):
    >6te9F (F:)
syavagalqaavyqqlradavlaalvgtavydavppgplagtyvslgpedvadasdktga
gavhdfvisvitdaagfatakaaaaavsdalvgadlvlsrgrlvglwflrakarrvekad
mrridlvfrarveg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6te9G (G:)
maaqngkdllikldltgsgqfetiaglratrisfnaetvdvtslesqggwrellggagvr
sasisgagvfkdadtderarqiffdgevpefqviipdfgivqgpfmitsidyagshngea
syelamasagalsftai

    Sequence, based on observed residues (ATOM records):
    >6te9G (G:)
aqngkdllikldlqfetiaglratrisfnaetvdvtslesqggwrellggagvrsasisg
agvfkdadtderarqiffdgevpefqviipdfgivqgpfmitsidyagshngeasyelam
asagalsfta