PDB entry 6t9k

View 6t9k on RCSB PDB site
Description: saga core module
Deposited on 2019-10-28, released 2020-01-29
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: Transcription factor SPT20
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Protein SPT3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Transcription initiation factor TFIID subunit 5
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: transcription initiation factor tfiid subunit 6
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Transcription initiation factor TFIID subunit 9
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Transcription initiation factor TFIID subunit 10
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Transcriptional coactivator HFI1/ADA1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Transcription initiation factor TFIID subunit 12
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Transcriptional activator SPT7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: SAGA-associated factor 73
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: unassigned sequence
    Species: SACCHAROMYCES CEREVISIAE S288C [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
    • PDB 6T9K (0-End)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6t9kB (B:)
msansptgndphvfgipvnatpsnmgspgspvnvpppmnpavanvnhpvmrtnsnsnane
gtrtltreqiqqlqqrqrlllqqrlleqqrkqqalqnyeaqfyqmlmtlnkrpkrlynfv
edadsilkkyeqylhsfefhiyennykicapansrlqqqqkqpeltsdgliltknnetlk
efleyvargripdaimevlrdcniqfyegnlilqvydhtntvdvtpkenkpnlnssssps
nnnstqdnskiqqpsepnsgvantgantankkasfkrprvyrtllkpndlttyydmmsya
dnarfsdsiyqqfeseiltltkrnlslsvplnpyehrdmleetafsephwdsekksfihe
hraestregtkgvvghieerdefpqhssnyeqlmlimnertttitnstfavsltknamei
assssngvrgassstsnsasntrnnslangnqvalaaaaaaaavgstmgndnnqfsrlkf
ieqwrinkekrkqqalsaninptpfnarismtapltpqqqllqrqqqaleqqqnggamkn
ankrsgnnatsnnnnnnnnldkpkvkrprknakksesgtpapkkkrmtkkkqsasstpss
ttms

    Sequence, based on observed residues (ATOM records):
    >6t9kB (B:)
rpkrlynfvedadsilkkyeqylhsfefhiyennykicapagliltknnetlkefleyva
rgripdaimevlrdcniqfyegnlilqvydhtntvdvrprvyrtllkpndlttyydmmsy
adnarfsdsiyqqfeseiltltkrnlslsvplnpyehrdmleetafsephwdsekksfih
e

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6t9kC (C:)
mmdkhkyrveiqqmmfvsgeindppvettsliedivrgqvieillqsnktahlrgsrsil
pedviflirhdkakvnrlrtylswkdlrknakdqdasagvasgtgnpgaggeddlkkagg
gekdekdggnmmkvkksqiklpwelqfmfnehplennddnddmdedereanivtlkrlkm
addrtrnmtkeeyvhwsdcrqasftfrknkrfkdwsgisqltegkphddvidilgfltfe
ivcsltetalkikqreqvlqtqkdksqqssqdntnfefasstlhrkkrlfdgpenvinpl
kprhieeawrvlqtidmrhraltnfkggrlsskpiim

    Sequence, based on observed residues (ATOM records):
    >6t9kC (C:)
dkhkyrveiqqmmfvsgeindppvettsliedivrgqvieillqsnktahlrgsrsilpe
dviflirhdkakvnrlrtylswkdklpwelqfmfnehpleeyvhwsdcrqasftfrknkr
fkdwsgisqltegkphddvidilgfltfeivcsltetalkikqreqvlqtqkdknplkpr
hieeawrvlqtidmrhraltnfkggrlsskpiim

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6t9kD (D:)
msqkqstnqnqngthqpqpvknqrtnnaagansgqqpqqqsqgqsqqqgrsngpfsasdl
nrivleylnkkgyhrteamlraesgrtltpqnkqspantktgkfpeqssippnpgktakp
isnptnlsskrdaeggivssgrleglnapenyiraysmlknwvdssleiykpelsyimyp
ifiylflnlvaknpvyarrffdrfspdfkdfhgseinrlfsvnsidhikenevasafqsh
kyritmskttlnlllyflnenesiggsliisvinqhldpnivesvtarekladgikvlsd
sengngkqnlemnsvpvklgpfpkdeefvkeietelkikddqekqlnqqtagdnysgann
rtllqeykamnnekfkdntgdddkdkikdkiakdeekkeselkvdgekkdsnlsspardi
lplppktaldlkleiqkvkesrdaikldnlqlalpsvcmytfqntnkdmscldfsddcri
aaagfqdsyikiwsldgsslnnpnialnnndkdedptcktlvghsgtvystsfspdnkyl
lsgsedktvrlwsmdthtalvsykghnhpvwdvsfsplghyfatashdqtarlwscdhiy
plrifaghlndvdcvsfhpngcyvftgssdktcrmwdvstgdsvrlflghtapvisiavc
pdgrwlstgsedgiinvwdigtgkrlkqmrghgknaiyslsyskegnvlisggadhtvrv
wdlkkattepsaepdepfigylgdvtasinqdikeygrrrtviptsdlvasfytkktpvf
kvkfsrsnlalaggafrp

    Sequence, based on observed residues (ATOM records):
    >6t9kD (D:)
sasdlnrivleylnkkgyhrteamlraesgrtltpqnkqspantktgkfpeqssippnpg
ktakpisnptpenyiraysmlknwvdssleiykpelsyimypifiylflnlvaknpvyar
rffdrfspdfkdfhgseinrlfsvnsidhikenevasafqshkyritmskttlnlllyfl
nenesiggsliisvinqhldpnidlkleiqkvkesrdaikldnlqlalpsvcmytfqntn
kdmscldfsddcriaaagfqdsyikiwsldgsslnnpnialnnndkdedptcktlvghsg
tvystsfspdnkyllsgsedktvrlwsmdthtalvsykghnhpvwdvsfsplghyfatas
hdqtarlwscdhiyplrifaghlndvdcvsfhpngcyvftgssdktcrmwdvstgdsvrl
flghtapvisiavcpdgrwlstgsedgiinvwdigtgkrlkqmrghgknaiyslsyskeg
nvlisggadhtvrvwdlkkattepsaepdegdvtasinqdikeygrrrtviptsdlvasf
ytkktpvfkvkfsrsnlalaggafrp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6t9kE (E:)
mstqqqsytiwspqdtvkdvaeslgleninddvlkalamdveyrileiieqavkfkrhsk
rdvlttddvskalrvlnveplygyydgsevnkavsfskvntsggqsvyyldeeevdfdrl
ineplpqvprlptftthwlavegvqpaiiqnpnlndirvsqppfirgaivtalndnslqt
pvtsttasasvtdtgasqhlsnvkpgqntevkplvkhvlskelqiyfnkvistltaksqa
deaaqhmkqaaltslrtdsglhqlvpyfiqfiaeqitqnlsdlqllttilemiysllsnt
sifldpyihslmpsiltlllakklggspkddspqeiheflertnalrdfaaslldyvlkk
fpqaykslkprvtrtllktfldinrvfgtyygclkgvsvlegesirfflgnlnnwarlvf
nesgitldnieehlnddsnptrtkftkeetqilvdtvisallvlkkdlpdlyegkgekvt
dedkekllercgvtigfhilkrddakelisaiffge

    Sequence, based on observed residues (ATOM records):
    >6t9kE (E:)
ytiwspqdtvkdvaeslgleninddvlkalamdveyrileiieqavkfkrhskrdvlttd
dvskalrvlnveplygyydgsevnkavsfskvntsggqsvyyldeeevdfdrlineplpq
vprlptftthwlavegvqpaiiqnpnlndirvsqppfirgaivtalndnsasvtdtgasq
hlsnvkpgqntevkplvkhvlskelqiyfnkvistlaaqhmkqaaltslrtdsglhqlvp
yfiqfiaeqitqnlsdlqllttilemiysllsntsifldpyihslmpsiltlllakklgg
spkddspqeiheflertnalrdfaaslldyvlkkfpqaykslkprvtrtllktfldinrv
fgtyygclkgvsvlegesirfflgnlnnwarlvfnesgitldnieehltkftkeetqilv
dtvisallvlkkd

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6t9kF (F:)
mngggknvlnknsvgsvsevgpdstqeetprdvrllhlllasqsihqyedqvplqlmdfa
hrytqgvlkdalvyndyagsgnsagsglgvedirlaiaartqyqfkptapkelmlqlaae
rnkkalpqvmgtwgvrlppekycltakewdledpksm

    Sequence, based on observed residues (ATOM records):
    >6t9kF (F:)
prdvrllhlllasqsihqyedqvplqlmdfahrytqgvlkdalvyndyalgvedirlaia
artqyqfkptapkelmlqlaaernkkalpqvmgtwgvrlppekycltakew

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6t9kG (G:)
mdfeedydaefddnqegqletpfpsvagaddgdndnddsvaenmkkkqkreavvddgsen
afgipeftrkdktleeilemmdstppiipdavidyyltkngfnvadvrvkrllalatqkf
vsdiakdayeysrirssvavsnannsqararqllqgqqqpgvqqisqqqhqqnekttask
vvltvndlssavaeyglnigrpdfyr

    Sequence, based on observed residues (ATOM records):
    >6t9kG (G:)
ftrkdktleeilemmdstppiipdavidyyltkngfnvadvrvkrllalatqkfvsdiak
dayeysrirssvavsnannsqararqllqgqqqpgvqqisqqqhqqnekttaskvvltvn
dlssavaeyglnigrpdfyr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6t9kH (H:)
msaiqspapkplqptypaaspastnaymkpgligspavsnhtepnngnnetaepqgpnqr
idlgamieeltsllgkeswtkyaqiislfilgklsrkelsnelelvfspsaasleksntn
hhhslvrlhnqlllgifanslrenplgrngnesswgfgngsnnpnnklkrinkhnsqiev
ykkivmslplndrnrlkmitkeagkrgfifcsvfqarlnnipkipivtnpeslkrvksnn
lktplewsqdimngfnvplaseshslpdtdsfylrmvgiarehglvgtvdarcvelisla
ldqylkniieftidtvryrrkkysdyydlnesglyksvsemaadkrdakikqldddkned
ecadeaksinngnnsskddigdismssitkageavneelhenrtisltnediydslsifp
nlvepsgsyyaltnlglvnddelvdmksniddlpdflnekptftpldernvgtrhelnwl
ikgilted

    Sequence, based on observed residues (ATOM records):
    >6t9kH (H:)
ykkivmslplndrnrlkmitkeagkrgfifcsvfqarlnnipkipivtnpeslkrvksnn
lktplewsqdimngfnvplaseshslpdtdsfylrmvgiarehglvgtvdarcvelisla
ldqylkniieftidtvryrrkkysdysglyksvsemaadkrdakikqldddknedecade
aksinngnnsskddigdismssavneelhenrtisltnediydslsi

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6t9kI (I:)
mssnpensgvnannntgtgnadaitgaqqnmvlqprqlqemaakfrtlltearnvgettp
rgkelmfqaakikqvydaltlnrrrqqaaqaynntsnsnssnpasiptenvpnssqqqqq
qqqqtrnnsnkfsnmikqvltpeenqeyeklwqnfqvrhtsikeketylkqnidrleqei
nkqtdegpkqqlqekkiellndwkvlkieytklfnnyqnskktfyvecarhnpalhkflq
estqqqrvqqqrvqqqqqqqqqqqqqqqqqqqqqqqrqgqnqrkisssnsteipsvtgpd
alksqqqqqntitatnnprgnvntsqteqskakvtnvnatasmlnnisssksaifkqtep
aipisenistktpapvayrsnrptitggsamnasalntpattklppyemdtqrvmskrkl
relvktvgidegdgetvidgdveellldladdfvtnvtafscrlakhrksdnleardiql
hlernwniripgysadeirstrkwnpsqnynqklqsitsdkvaaaknngnnvaslntkk

    Sequence, based on observed residues (ATOM records):
    >6t9kI (I:)
rklrelvktvgidegdgetvidgdveellldladdfvtnvtafscrlakhrksdnleard
iqlhlernwniripgysadeirstrkwnpsqnynqklqsitsdkvaaa

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6t9kK (K:)
mteripiknyqrtnakallklteklfnknffdlyltsqqlvvleyllsisseedklkawd
yflkgnialnveksfpltqeeehhgavspavdtrsddvssqtikdnnntntntsisnenh
veneiedkgdnaianednfvnndesdnveedlfkldledlkqqisgtrfignlslkiryv
lwqcaidyiycdrnefgdendteytlldveekeeeeigknekpqnkegiskfaededydd
edenydedstdvknvddppknldsisssnieidderrlvlnisisketlsklktnnveei
mgnwnkiyhsfeydketmikrlkleesdkmiekgkkkrsrsdleaatdeqdrentndepd
tnqklptpegstfsdtgnkrpkqsnldltvnlgienlslkhllssiqqkksqlgisdyel
khlimdvrknrskwtsderigqeelyeacekvvlelrnytehstpflnkvskreapnyhq
iikksmdlntvlkklksfqydskqefvddimliwkncltynsdpshflrghaiamqkksl
qlirmipnitirnradlekeiedmekdkdyeldeeeevagsgrkglnmgahmlakengkv
sekdssktvkdeaptnddkltsvipegekekdktasstvtvhenvnkneikengkneeqd
mveessktedsskdadaakkdtedglqdktaenkeagenneeeeddddedededmvdsqs
yllekdddrddleisvwktvtakvraeiclkrteyfkngklnsdseaflknpqrmkrfdq
lfleykeqkalesyrqkieqnsimkngfgtvlkqedddqlqfhndhslngneafekqpnd
ielddtrflqeydisnaipdivyegvntktldkmedasvdrmlqnginkqsrflankdlg
ltpkmnqnitliqqirhichkislirmlqsplsaqnsrsnpnaflnnhiynytiiddsld
idpvsqlpthdyknnreliwkfmhkniskvamangfetahpsainmlteiagdylsnlik
tlklhhetnslnrgtnvemlqttllenginrpddlfsyvesefgkktkklqdikqklesf
lrallrptlqelsernfedesqsfftgdfaseltgedffgfrelglekefgvlsssvplq
llttqfqtvdgetkvqakkiqpeesdsivykkitkgmldagsfwntllpllqkdyerska
yiakqskssandktsmtstednsfalleedqfvskktatkarlpptgkisttykkkpias
afilpeedlendvkadptttvnakvgaendgdsslflrtpqpldpldmddafddtnmgsn
ssfslslprlnq

    Sequence, based on observed residues (ATOM records):
    >6t9kK (K:)
lfkldledlkqqisgtrfignlslkiryvlwqcaiddrddleisvwktvtakvraeiclk
rtelqeydisnaipdivyegvntktldkmedasvdrmlqnginkqsrflankdlgltpkm
nqnitliqqirhichkislirmlqsytiiddsldidpvsqlpthdyknnreliwkfmhkn
iskvamangfetahpsainmlteiagdylsnliktlklhhetnslnrgtnvemlqttlle
nginrpddlfsyvesefgkktkklqdikqklesflrall

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6t9kQ (Q:)
mrsgdaeikgikpkvieeyslsqgsgpsndswkslmssakdtplqydhmnreslkkyfnp
naqliedpldkpiqyrvcekcgkplaltaivdhlenhcagasgksstdprdestretirn
gvestgrnnndddnsndnnndddddddnddneddddadddddnsnganykkndssfnplk
rstsmesantpnmdtkrsktgtpqtfsssikkqkkvkqrnptekhlidfnkqcgvelpeg
gycarsltckshsmgakravsgrskpydvlladyhrehqtkigaaaekrakqqelqklqk
qiqkeqkkhtqqqkqgqrskqrnvnggksaknggkstvhngnnineighvnltpeeettq
vlngvsrsfplplestvlssvryrtkyfrmremfassfsvkpgytspgygaihsrvgcld
ldrttdykfrvrtpqpinhltnqnlnpkqiqrlqqqralqaqllsqqqqqqqqqqqhhsp
qaqaqastqqptqgmvpnhfpggatnssfnanvsskqiqqqqqqqqhksqdtgltpleiq
sqqqklrqqqlqqqkfeaaasylanatklmqesnqdshlsgthnnnsskngnnnlmtmka
sisspntsvnsiqsppsvnsvngsgqgvstginvsgnngrievgignsvnpyngrin

    Sequence, based on observed residues (ATOM records):
    >6t9kQ (Q:)
tpeeettqvlngvsrsfplplestvlssvryrtkyfrmremfassfsvkpgytspgygai
hsrvgcldldrttdykfrvrtpqp

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6t9kU (U:)
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

    Sequence, based on observed residues (ATOM records):
    >6t9kU (U:)
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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