SCOPe 2.08: Structural Classification of Proteins

PDB entry 6t46

View 6t46 on RCSB PDB site
Description: structure of the rap conjugation gene regulator of the plasmid pls20 in complex with the phr* peptide
Deposited on 2019-10-12, released 2020-06-24
The last revision was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Response regulator aspartate phosphatase
Species: Bacillus subtilis subsp. natto [TaxId:86029]
Gene: rapA
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY6
Chain 'B':
Compound: Quorum-sensing secretion protein (processed)
Species: Bacillus subtilis subsp. natto, synthetic [TaxId:86029]
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY7 (Start-43)
Chain 'C':
Compound: Response regulator aspartate phosphatase
Species: Bacillus subtilis subsp. natto [TaxId:86029]
Gene: rapA
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY6 (Start-367)
Chain 'D':
Compound: Quorum-sensing secretion protein (processed)
Species: Bacillus subtilis subsp. natto, synthetic [TaxId:86029]
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY7 (Start-43)
Chain 'E':
Compound: Response regulator aspartate phosphatase
Species: Bacillus subtilis subsp. natto [TaxId:86029]
Gene: rapA
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY6 (Start-367)
Chain 'F':
Compound: Quorum-sensing secretion protein (processed)
Species: Bacillus subtilis subsp. natto, synthetic [TaxId:86029]
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY7 (Start-43)
Chain 'G':
Compound: Response regulator aspartate phosphatase
Species: Bacillus subtilis subsp. natto [TaxId:86029]
Gene: rapA
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY6 (Start-367)
  - expression tag (368-370)
Chain 'H':
Compound: Quorum-sensing secretion protein (processed)
Species: Bacillus subtilis subsp. natto, synthetic [TaxId:86029]
Database cross-references and differences (RAF-indexed):
- Uniprot E9RIY7 (Start-43)
Heterogens: CL, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6t46A (A:)
mlskvkkvpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilld
hrhslcfdqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqk
lssipnieetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvv
ginlydmgrlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfrea
yshewlrdspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyh
lyeqpsidevkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqi
qritealglehhhhhh

Sequence, based on observed residues (ATOM records):

>6t46A (A:)
pspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilldhrhslcfd
qeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqklssipnie
etkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvvginlydmg
rlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfreayshewlrd
spkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyhlyeqpsid
evkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqiqriteal

Chain 'B':
Sequence, based on SEQRES records:
```
>6t46B (B:)
mkkingwivvallavttvgaaaaiqytnnadspgqfqvaqkgmy
```
Sequence, based on observed residues (ATOM records):
```
>6t46B (B:)
qkgmy
```

Chain 'C':
Sequence, based on SEQRES records:

>6t46C (C:)
mlskvkkvpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilld
hrhslcfdqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqk
lssipnieetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvv
ginlydmgrlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfrea
yshewlrdspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyh
lyeqpsidevkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqi
qritealglehhhhhh

Sequence, based on observed residues (ATOM records):

>6t46C (C:)
kkvpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilldhrhsl
cfdqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqklssip
nieetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvvginly
dmgrlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfreayshew
lrdspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyhlyeqp
sidevkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqiqrite
alg

Chain 'D':
Sequence, based on SEQRES records:
```
>6t46D (D:)
mkkingwivvallavttvgaaaaiqytnnadspgqfqvaqkgmy
```
Sequence, based on observed residues (ATOM records):
```
>6t46D (D:)
qkgmy
```

Chain 'E':
Sequence, based on SEQRES records:

>6t46E (E:)
mlskvkkvpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilld
hrhslcfdqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqk
lssipnieetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvv
ginlydmgrlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfrea
yshewlrdspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyh
lyeqpsidevkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqi
qritealglehhhhhh

Sequence, based on observed residues (ATOM records):

>6t46E (E:)
vpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilldhrhslcf
dqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqklssipni
eetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvvginlydm
grlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfreayshewlr
dspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyhlyeqpsi
devkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqiqriteal
g

Chain 'F':
Sequence, based on SEQRES records:
```
>6t46F (F:)
mkkingwivvallavttvgaaaaiqytnnadspgqfqvaqkgmy
```
Sequence, based on observed residues (ATOM records):
```
>6t46F (F:)
qkgmy
```

Chain 'G':
Sequence, based on SEQRES records:

>6t46G (G:)
mlskvkkvpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilld
hrhslcfdqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqk
lssipnieetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvv
ginlydmgrlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfrea
yshewlrdspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyh
lyeqpsidevkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqi
qritealglehhhhhh

Sequence, based on observed residues (ATOM records):

>6t46G (G:)
kvpspyvgnllnkwhdyimqekvhesiekrteikqllsqaednkdlvdyfilldhrhslc
fdqeasmgdvvnmlskgshdllinfyfelfagdyeffkknyvkaisfyekaeqklssipn
ieetkfaefhykigvayyeidqhlvsvnkvtkardiykksdmwnleaiqcslvvginlyd
mgrlddadayfrdaltealdhgydkpitkiyhnlglvhwqkgslelalhyfreayshewl
rdspkgqqtvymlsrvlytmgqneeayhwyelgiemarkfddheykakhdilyhlyeqps
idevkqslafleernlwpdvskiakgiselyekkgdlvtsheflkrafyakeqiqritea
lgleh

Chain 'H':
Sequence, based on SEQRES records:
```
>6t46H (H:)
mkkingwivvallavttvgaaaaiqytnnadspgqfqvaqkgmy
```
Sequence, based on observed residues (ATOM records):
```
>6t46H (H:)
qkgmy
```