PDB entry 6t3f

View 6t3f on RCSB PDB site
Description: crystal structure nipah virus fusion glycoprotein in complex with a neutralising fab fragment
Deposited on 2019-10-10, released 2019-11-27
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'F':
    Compound: Fusion glycoprotein F0
    Species: Nipah virus [TaxId:121791]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9IH63 (3-End)
      • expression tag (1-2)
  • Chain 'H':
    Compound: Fab66 heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6T3F
  • Chain 'L':
    Compound: Fab66 light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6T3F (Start-215)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6t3fF (F:)
etggilhyeklskiglvkgvtrkykiksnpltkdivikmipnvsnmsqctgsvmenyktr
lngiltpikgaleiyknnthdlvgdvrlagvimagvaigiataaqitagvalyeamknad
ninklkssiestneavvklqetaektvyvltalqdyintnlvptidkisckqtelsldla
lskylsdllfvfgpnlqdpvsnsmtiqaisqafggnyetllrtlgyatedfddllesdsi
tgqiiyvdlssyyiivrvyfpilteiqqayiqellpvsfnndnsewisivpnfilvrntl
isnieigfclitkrsvicnqdyatpmtnnmrecltgstekcprelvvsshvprfalsngv
lfancisvtcqcqttgraisqsgeqtllmidnttcptavlgnviislgkylgsvnynseg
iaigppvftdkvdissqissmnqslqqskdyikeaqrlldgtmkqiedkieeilskiyhi
eneiarikkligeggshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6t3fF (F:)
tggilhyeklskiglvkgvtrkykiksnpltkdivikmipnvsnmsqctgsvmenyktrl
ngiltpikgaleiyknnthdlvgdvrlagvimagvaigiataaqitagvalyeamknadn
inklkssiestneavvklqetaektvyvltalqdyintnlvptidkisckqtelsldlal
skylsdllfvfgpnlqdpvsnsmtiqaisqafggnyetllrtlgyatedfddllesdsit
gqiiyvdlssyyiivrvyfpilteiqqayiqellpvsfnndnsewisivpnfilvrntli
snieigfclitkrsvicnqdyatpmtnnmrecltgstekcprelvvsshvprfalsngvl
fancisvtcqcqttgraisqsgeqtllmidnttcptavlgnviislgkylgsvnynsegi
aigppvftdkvdissqissmnqslqqskdyikea

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6t3fH (H:)
etgsggglvkpggtltltckasgftlssywmcwvrqapgkgleliaclytngattwyasw
vngrfaisrstsrntvdlnmtsltaadtatyfcargsgsgwswfniwgpgtlvtvssgqp
kapsvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrqssgly
slssvvsvtsssqpvtcnvahpatntkvdktvapstcnkgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6t3fH (H:)
glvkpggtltltckasgftlssywmcwvrqapgkgleliaclytngattwyaswvngrfa
isrstsrntvdlnmtsltaadtatyfcargsgsgwswfniwgpgtlvtvssgqpkapsvf
plapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrqssglyslssvv
svtstcnvahpatntkvdktv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6t3fL (L:)
etgvmtqtpasveaavggtvtikcqasqniisslawyqqkpgqrpklliyyastlasgvp
srfkgsgsgtqftltisdlecadaatyycqsyyysgitygnafgggtevvvkgdpvaptv
lifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynls
stltltstqynshkeytckvtqgttsvvqsfsrknc

    Sequence, based on observed residues (ATOM records):
    >6t3fL (L:)
tgvmtqtpasveaavggtvtikcqasqniisslawyqqkpgqrpklliyyastlasgvps
rfkgsgsgtqftltisdlecadaatyycqsyyysgitygnafgggtevvvkgdpvaptvl
ifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlss
tltltstqynshkeytckvtqgttsvvqsfsrknc