PDB entry 6t2v

View 6t2v on RCSB PDB site
Description: cryo-em structure of the recbcd in complex with chi-plus2 substrate
Deposited on 2019-10-09, released 2020-01-01
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: RecBCD enzyme subunit RecB
    Species: Escherichia coli [TaxId:562]
    Gene: recB, ior, rorA, b2820, JW2788
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08394
      • engineered mutation (1080)
  • Chain 'C':
    Compound: RecBCD enzyme subunit RecC
    Species: Escherichia coli [TaxId:562]
    Gene: recC, b2822, JW2790
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RecBCD enzyme subunit RecD
    Species: Escherichia coli [TaxId:562]
    Gene: recD, hopE, b2819, JW2787
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA (Chi-plus2)
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6t2vB (B:)
gmsdvaetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveel
lvvtfteaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaer
qmdeaavftihgfcqrmlnlnafesgmlfeqqliedesllryqacadfwrrhcyplprei
aqvvfetwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrda
vgeldaliessgidrrkfnrsnqakwidkisawaeeetnsyqlpeslekfsqrfledrtk
aggetprhplfeaidqllaeplsirdlvitralaeiretvarekrrrgelgfddmlsrld
salrsesgevlaaairtrfpvamidefqdtdpqqyrifrriwhhqpetallligdpkqai
yafrgadiftymkarsevhahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvk
sagknqalrfvfkgetqpamkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeal
lmngddarpvrasdisvlvrsrqeaaqvrdaltlleipsvylsnrdsvfetleaqemlwl
lqavmtperentlrsalatsmmglnaldietlnndehawdvvveefdgyrqiwrkrgvmp
mlralmsarniaenllataggerrltdilhisellqeagtqlesehalvrwlsqhilepd
snassqqmrlesdkhlvqivtihkskgleyplvwlpfitnfrvqeqafyhdrhsfeavld
lnaapesvdlaeaerlaedlrllyvaltrsvwhcslgvaplvrrrgdkkgdtdvhqsalg
rllqkgepqdaaglrtciealcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgd
nwrvtsysglqqrghgiaqdlmprldvdaagvasvveeptltphqfprgaspgtflhslf
edldftqpvdpnwvreklelggfesqwepvltewitavlqaplnetgvslsqlsarnkqv
emefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgfidlvfrhegryyll
ayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhriadydyehhfggvi
ylflrgvdkehpqqgiyttrpnaglialmdemfagmtleea

    Sequence, based on observed residues (ATOM records):
    >6t2vB (B:)
aetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveellvvtf
teaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaerqmdea
avftihgfcqrmlnlnafesgmlfeqqliedesllryqacadfwrrhcyplpreiaqvvf
etwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrdavgeld
aliessgidrrkfnrsnqakwidkisawaeeetnsyqlpeslekftprhplfeaidqlla
eplsirdlvitralaeiretvarekrrrgelgfddmlsrldsalrsesgevlaaairtrf
pvamidefqdtdpqqyrifrriwhhqpetallligdpkqaiyafrgadiftymkarsevh
ahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvksagknqalrfvfkgetqpa
mkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeallmngddarpvrasdisvlv
rsrqeaaqvrdaltlleipsvylsnrdsvfetleaqemlwllqavmtperentlrsalat
smmglnaldietlnndehawdvvveefdgyrqiwrkrgvmpmlralmsarniaenllata
ggerrltdilhisellqeagtqlesehalvrwlsqhilepdsnassqqmrlesdkhlvqi
vtihkskgleyplvwlpfitnfrvqeqafyhdrhsfeavldlnaapesvdlaeaerlaed
lrllyvaltrsvwhcslgvaplvrrrgdkkgdtdvhqsalgrllqkgepqdaaglrtcie
alcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgdnwrvtsysglqptltphqf
prgaspgtflhslfedldftqpvdpnwvreklelggfesqwepvltewitavlqaplnet
gvslsqlsarnkqvemefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgf
idlvfrhegryyllayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhr
iadydyehhfggviylflrgvdkehpqqgiyttrpnaglialmdemfag

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6t2vC (C:)
mlrvyhsnrldvlealmefivererlddpfepemilvqstgmaqwlqmtlsqkfgiaani
dfplpasfiwdmfvrvlpeipkesafnkqsmswklmtllpqlleredftllrhyltddsd
krklfqlsskaadlfdqylvyrpdwlaqwetghlveglgeaqawqaplwkalveythqlg
qprwhranlyqrfietlesattcppglpsrvficgisalppvylqalqalgkhieihllf
tnpcryywgdikdpaylaklltrqrrhsfedrelplfrdsenagqlfnsdgeqdvgnpll
aswgklgrdyiyllsdlessqeldafvdvtpdnllhniqsdilelenravagvnieefsr
sdnkrpldpldssitfhvchspqrevevlhdrllamleedptltprdiivmvadidsysp
fiqavfgsapadrylpyaisdrrarqshpvleafisllslpdsrfvsedvlalldvpvla
arfditeeglrylrqwvnesgirwgidddnvrelelpatgqhtwrfgltrmllgyamesa
qgewqsvlpydessgliaelvghlasllmqlniwrrglaqerpleewlpvcrdmlnaffl
pdaeteaamtlieqqwqaiiaeglgaqygdavplsllrdelaqrldqerisqrflagpvn
ictlmpmrsipfkvvcllgmndgvyprqlaplgfdlmsqkpkrgdrsrrdddrylfleal
isaqqklyisyigrsiqdnserfpsvlvqelidyigqshylpgdealncdesearvkahl
tclhtrmpfdpqnyqpgerqsyarewlpaasqagkahsefvqplpftlpetvpletlqrf
wahpvraffqmrlqvnfrtedseipdtepfileglsryqinqqllnalveqddaerlfrr
fraagdlpygafgeifwetqcqemqqladrviacrqpgqsmeidlacngvqitgwlpqvq
pdgllrwrpsllsvaqgmqlwlehlvycasggngesrlflrkdgewrfpplaaeqalhyl
sqliegyregmsapllvlpesggawlktcydaqndamldddstlqkartkflqayegnmm
vrgegddiwyqrlwrqltpetmeaiveqsqrfllplfrfnqs

    Sequence, based on observed residues (ATOM records):
    >6t2vC (C:)
mlrvyhsnrldvlealmefivererlddpfepemilvqstgmaqwlqmtlsqkfgiaani
dfplpasfiwdmfvrvlpeipkesafnkqsmswklmtllpqlleredftllrhyltddsd
krklfqlsskaadlfdqylvyrpdwlaqwetghlveglgeaqawqaplwkalveythqlg
qprwhranlyqrfietlesattcppglpsrvficgisalppvylqalqalgkhieihllf
tnpcryywgdikdpaylaklltrqrrhsfedrelplfrdsenagqlfnsdgeqdvgnpll
aswgklgrdyiyllsdlessqeldafvdvtpdnllhniqsdilelenravagvnieefsr
sdnkrpldpldssitfhvchspqrevevlhdrllamleedptltprdiivmvadidsysp
fiqavfgsapadrylpyaisdrrarqshpvleafisllslpdsrfvsedvlalldvpvla
arfditeeglrylrqwvnesgirwgidddnvrelelpatgqhtwrfgltrmllgyamesa
qgewqsvlpydessgliaelvghlasllmqlniwrrglaqerpleewlpvcrdmlnaffl
pdaeteaamtlieqqwqaiiaeglgaqygdavplsllrdelaqrldqerisqrflagpvn
ictlmpmrsipfkvvcllgmndgvyprqlaplgfdlmsqkpkrgdrsrrdddrylfleal
isaqqklyisyigrsiqdnserfpsvlvqelidyigqshylpgdealncdesearvkahl
tclhtrmpfdpqnyqpgerqsyarewlpaasqagkahsefvqplpftlpetvpletlqrf
wahpvraffqmrlqvnfrtedseipdtepfileglsryqinqqllnalveqddaerlfrr
fraagdlpygafgeifwetqcqemqqladrviacrqpgqsmeidlacngvqitgwlpqvq
pdgllrwrpsllsvaqgmqlwlehlvycasggngesrlflrkdgewrfpplaaeqalhyl
sqliegyregmsapllvlpesggawlktcydaqndamldddstlqkartkflqayegnmm
vrgegddiwyqrlwrqltpetmeaiveqsqrfllplfrfnq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6t2vD (D:)
mklqkqlleavehkqlrpldvqfaltvagdehpavtlaaallshdageghvclplsrlen
neashpllatcvseigelqnweecllasqavsrgdeptpmilcgdrlylnrmwcnertva
rffnevnhaievdeallaqtldklfpvsdeinwqkvaaavaltrrisvisggpgtgkttt
vakllaaliqmadgercrirlaaptgkaaarlteslgkalrqlpltdeqkkripedastl
hrllgaqpgsqrlrhhagnplhldvlvvdeasmidlpmmsrlidalpdharviflgdrdq
lasveagavlgdicayanagftaerarqlsrltgthvpagtgteaaslrdslcllqksyr
fgsdsgigqlaaainrgdktavktvfqqdftdiekrllqsgedyiamleealagygryld
llqaraepdliiqafneyqllcalregpfgvaglnerieqfmqqkrkihrhphsrwyegr
pvmiarndsalglfngdigialdrgqgtrvwfampdgniksvqpsrlpehettwamtvhk
sqgsefdhaalilpsqrtpvvtrelvytavtrarrrlslyaderilsaaiatrterrsgl
aalfssre

    Sequence, based on observed residues (ATOM records):
    >6t2vD (D:)
avehkqlrpldvqfaltvagdehpavtlaaallshdageghvclplsrlenneashplla
tcvseigelqnweecllasqavsrgdeptpmilcgdrlylnrmwcnertvarffnevnha
ievdeallaqtldklfpvsdeinwqkvaaavaltrrisvisggpgtgktttvakllaali
qmadgercrirlaaptgkaaarlteslgkalrqlpltdeqkkripedastlhrllgaqpg
sqrlrhhagnplhldvlvvdeasmidlpmmsrlidalpdharviflgdrdqlasveagav
lgdicayanagftaerarqlsrltgthvpagtgteaaslrdslcllqksyrfgsdsgigq
laaainrgdktavktvfqqdftdiekrllqsgedyiamleealagygryldllqaraepd
liiqafneyqllcalregpfgvaglnerieqfmqqkrkihrhphsrwyegrpvmiarnds
alglfngdigialdrgqgtrvwfampdgniksvqpsrlpehettwamtvhksqgsefdha
alilpsqrtpvvtrelvytavtrarrrlslyaderilsaaiatrterrsglaalfss

  • Chain 'X':
    No sequence available.