PDB entry 6t1d

View 6t1d on RCSB PDB site
Description: pleurotus ostreatus lectin (pol), compelx with melibiose
Deposited on 2019-10-04, released 2020-02-19
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-24.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lectin
    Species: Pleurotus ostreatus [TaxId:5322]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E7E2M2 (Start-355)
      • conflict (25)
      • conflict (33-34)
  • Chain 'B':
    Compound: lectin
    Species: Pleurotus ostreatus [TaxId:5322]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E7E2M2 (Start-355)
      • conflict (25)
      • conflict (33-34)
  • Chain 'C':
    Compound: lectin
    Species: Pleurotus ostreatus [TaxId:5322]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E7E2M2 (Start-355)
      • conflict (25)
      • conflict (33-34)
  • Chain 'D':
    Compound: lectin
    Species: Pleurotus ostreatus [TaxId:5322]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E7E2M2 (Start-355)
      • conflict (25)
      • conflict (33-34)
  • Chain 'E':
    Compound: lectin
    Species: Pleurotus ostreatus [TaxId:5322]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E7E2M2 (Start-355)
      • conflict (25)
      • conflict (33-34)
  • Chain 'F':
    Compound: lectin
    Species: Pleurotus ostreatus [TaxId:5322]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E7E2M2 (Start-355)
      • conflict (25)
      • conflict (33-34)
  • Heterogens: GLA, GLC, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6t1dA (A:)
gshmapdsqvcdvgstatckitatprqfqpallstskwiwtgenpipggsniistrpfrk
nitapcgkcsvcativvasddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagq
nlvanspagimasilvhfsdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqg
ayqnsvwgppvlppvlplrgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvlia
addrytlyvngatvgsgssytvadaytipnlhptfntfainatngggpagviatilitys
dgsnetvvtdaswkaiqtipqgfqpplidefgwesakiigafgvapwgagmvipsa

    Sequence, based on observed residues (ATOM records):
    >6t1dA (A:)
ckitatprqfqpallstskwiwtgenpipggsniistrpfrknitapcgkcsvcativva
sddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagqnlvanspagimasilvhf
sdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqgayqnsvwgppvlppvlpl
rgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvliaaddrytlyvngatvgsgs
sytvadaytipnlhptfntfainatngggpagviatilitysdgsnetvvtdaswkaiqt
ipqgfqpplidefgwesakiigafgvapwgagmvipsa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6t1dB (B:)
gshmapdsqvcdvgstatckitatprqfqpallstskwiwtgenpipggsniistrpfrk
nitapcgkcsvcativvasddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagq
nlvanspagimasilvhfsdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqg
ayqnsvwgppvlppvlplrgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvlia
addrytlyvngatvgsgssytvadaytipnlhptfntfainatngggpagviatilitys
dgsnetvvtdaswkaiqtipqgfqpplidefgwesakiigafgvapwgagmvipsa

    Sequence, based on observed residues (ATOM records):
    >6t1dB (B:)
ckitatprqfqpallstskwiwtgenpipggsniistrpfrknitapcgkcsvcativva
sddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagqnlvanspagimasilvhf
sdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqgayqnsvwgppvlppvlpl
rgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvliaaddrytlyvngatvgsgs
sytvadaytipnlhptfntfainatngggpagviatilitysdgsnetvvtdaswkaiqt
ipqgfqpplidefgwesakiigafgvapwgagmvipsa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6t1dC (C:)
gshmapdsqvcdvgstatckitatprqfqpallstskwiwtgenpipggsniistrpfrk
nitapcgkcsvcativvasddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagq
nlvanspagimasilvhfsdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqg
ayqnsvwgppvlppvlplrgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvlia
addrytlyvngatvgsgssytvadaytipnlhptfntfainatngggpagviatilitys
dgsnetvvtdaswkaiqtipqgfqpplidefgwesakiigafgvapwgagmvipsa

    Sequence, based on observed residues (ATOM records):
    >6t1dC (C:)
ckitatprqfqpallstskwiwtgenpipggsniistrpfrknitapcgkcsvcativva
sddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagqnlvanspagimasilvhf
sdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqgayqnsvwgppvlppvlpl
rgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvliaaddrytlyvngatvgsgs
sytvadaytipnlhptfntfainatngggpagviatilitysdgsnetvvtdaswkaiqt
ipqgfqpplidefgwesakiigafgvapwgagmvipsa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6t1dD (D:)
gshmapdsqvcdvgstatckitatprqfqpallstskwiwtgenpipggsniistrpfrk
nitapcgkcsvcativvasddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagq
nlvanspagimasilvhfsdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqg
ayqnsvwgppvlppvlplrgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvlia
addrytlyvngatvgsgssytvadaytipnlhptfntfainatngggpagviatilitys
dgsnetvvtdaswkaiqtipqgfqpplidefgwesakiigafgvapwgagmvipsa

    Sequence, based on observed residues (ATOM records):
    >6t1dD (D:)
ckitatprqfqpallstskwiwtgenpipggsniistrpfrknitapcgkcsvcativva
sddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagqnlvanspagimasilvhf
sdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqgayqnsvwgppvlppvlpl
rgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvliaaddrytlyvngatvgsgs
sytvadaytipnlhptfntfainatngggpagviatilitysdgsnetvvtdaswkaiqt
ipqgfqpplidefgwesakiigafgvapwgagmvipsa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6t1dE (E:)
gshmapdsqvcdvgstatckitatprqfqpallstskwiwtgenpipggsniistrpfrk
nitapcgkcsvcativvasddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagq
nlvanspagimasilvhfsdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqg
ayqnsvwgppvlppvlplrgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvlia
addrytlyvngatvgsgssytvadaytipnlhptfntfainatngggpagviatilitys
dgsnetvvtdaswkaiqtipqgfqpplidefgwesakiigafgvapwgagmvipsa

    Sequence, based on observed residues (ATOM records):
    >6t1dE (E:)
ckitatprqfqpallstskwiwtgenpipggsniistrpfrknitapcgkcsvcativva
sddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagqnlvanspagimasilvhf
sdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqgayqnsvwgppvlppvlpl
rgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvliaaddrytlyvngatvgsgs
sytvadaytipnlhptfntfainatngggpagviatilitysdgsnetvvtdaswkaiqt
ipqgfqpplidefgwesakiigafgvapwgagmvipsa

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6t1dF (F:)
gshmapdsqvcdvgstatckitatprqfqpallstskwiwtgenpipggsniistrpfrk
nitapcgkcsvcativvasddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagq
nlvanspagimasilvhfsdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqg
ayqnsvwgppvlppvlplrgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvlia
addrytlyvngatvgsgssytvadaytipnlhptfntfainatngggpagviatilitys
dgsnetvvtdaswkaiqtipqgfqpplidefgwesakiigafgvapwgagmvipsa

    Sequence, based on observed residues (ATOM records):
    >6t1dF (F:)
ckitatprqfqpallstskwiwtgenpipggsniistrpfrknitapcgkcsvcativva
sddahtfyvngvrigtgagfrqgqalfvalqptwnlfaiagqnlvanspagimasilvhf
sdgtsetfvtdeswktlraappenfqlpstndsnwpsaavqgayqnsvwgppvlppvlpl
rgsnwiwtsdnvngaapvgsrafrktvnqctkvavcatvliaaddrytlyvngatvgsgs
sytvadaytipnlhptfntfainatngggpagviatilitysdgsnetvvtdaswkaiqt
ipqgfqpplidefgwesakiigafgvapwgagmvipsa