PDB entry 6t0v

View 6t0v on RCSB PDB site
Description: bat influenza a polymerase elongation complex with incoming utp analogue (complete polymerase)
Deposited on 2019-10-03, released 2020-04-15
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: EM
Resolution: 3.02 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase acidic protein
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: PA
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM92 (14-726)
      • expression tag (727)
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM91 (9-764)
      • expression tag (765)
  • Chain 'C':
    Compound: Polymerase basic protein 2
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM90 (9-End)
      • expression tag (7-8)
  • Chain 'M':
    Compound: Capped mRNA
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)), synthetic [TaxId:1129347]
  • Chain 'R':
    Compound: 3' vRNA
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)), synthetic [TaxId:1129347]
  • Chain 'V':
    Compound: 5' vRNA
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)), synthetic [TaxId:1129347]
  • Heterogens: M4H, MG, 2KH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6t0vA (A:)
    gshhhhhhhhgsgsmenfvrtnfnpmileraektmkeygenpqnegnkfaaisthmevcf
    mysdfhfidlegntivkendddnamlkhrfeiiegqerniawtivnsicnmtenskprfl
    pdlydyktnkfieigvtrrkvedyyyekasklkgenvyihifsfdgeematddeyildee
    srariktrlfvlrqelataglwdsfrqsekgeetleeefsypptfqrlanqslppsfkdy
    hqfkayvssfkangnieaklgamsekvnaqiesfdprtirelelpegkfctqrskfllmd
    amklsvlnpahegegipmkdakacldtfwgwkkatiikkhekgvntnylmiweqllesik
    emegkflnlkktnhlkwglgegqapekmdfedckevpdlfqykseppekrklaswiqsef
    nkaseltnsnwiefdelgndvapiehiasrrrnfftaevsqcraseyimkavyintalln
    ssctameeyqvipiitkcrdtsgqrrtnlygfiikgrshlrndtdvvnfislefsltdpr
    neihkwekycvleigdmeirtsistimkpvylyvrtngtskikmkwgmemrrcllqslqq
    vesmieaesavkekdmtepffrnrendwpigespqgiekgtigkvcrvllaksvfnsiya
    saqlegfsaesrklllliqafrdnldpgtfdlkglyeaieeciindpwvllnaswfnsfl
    kavqlsmgsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6t0vA (A:)
    menfvrtnfnpmileraektmkeygenpqnegnkfaaisthmevcfmysdfhfidlegnt
    ivkennamlkhrfeiiegqerniawtivnsicnmtenskprflpdlydyktnkfieigvt
    rrkvedyyyekasklkgenvyihifsfdgeematddeyildeesrariktrlfvlrqela
    taglwdsfrqseeeefsypptfqrlanqslppsfkdyhqfkayvssfkangnieaklgam
    sekvnaqiesfdprtirelelpegkfctqrskfllmdamklsvlnpahegegipmkdaka
    cldtfwgwkkatiikkhekgvntnylmiweqllesikemegkflnlkktnhlkwglgegq
    apekmdfedckevpdlfqykseppekrklaswiqsefnkaseltnsnwiefdelgndvap
    iehiasrrrnfftaevsqcraseyimkavyintallnssctameeyqvipiitkcrdtsg
    qrrtnlygfiikgrshlrndtdvvnfislefsltdprneihkwekycvleigdmeirtsi
    stimkpvylyvrtngtskikmkwgmemrrcllqslqqvesmieaesavkekdmtepffrn
    rendwpigespqgiekgtigkvcrvllaksvfnsiyasaqlegfsaesrklllliqafrd
    nldpgtfdlkglyeaieeciindpwvllnaswfnsflkavqlsmg
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6t0vB (B:)
    gsgsgsgsgmdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyss
    rgiwktnsetgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqeti
    daiqqtrvdkltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvl
    lsfendsmevtthfqkkkrirdnhskkmitqrtigkkrvkltkknyliraltlntmtkda
    ergklkrraiatpgmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmma
    kstdeelsytitgdntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarl
    grgymfesksmhlrtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgm
    fnmlstvlgvsvlnlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtck
    lvginmsqkksyinktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttvik
    tnminndlgpataqmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllv
    adggpnpynlrnlhipevclkwslmdpdyrgrlcnpnnpfvhhmevestnlavvmpahgp
    aksleydavatthswtpkrnrsilntnqrgilederiyqkccqvfekffpsstyrrpigm
    asmldamlsraridaridlesgrissqdfseitntckaiealkrqgsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6t0vB (B:)
    mdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyssrgiwktnse
    tgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqetidaiqqtrvd
    kltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvllsfendsme
    vtthfqkkkrirdnhskkmitqrtigkkrvkltkknyliraltlntmtkdaergklkrra
    iatpgmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmmakstdeelsy
    titgdntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarlgrgymfesk
    smhlrtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgmfnmlstvlg
    vsvlnlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtcklvginmsqk
    ksyinktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttviktnminndlg
    pataqmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllvadggpnpyn
    lrnlhipevclkwslmdpdyrgrlcnpnnpfvhhmevestksleydavatthswtpkrnr
    silntnqrgilederiyqkccqvfekffpsstyrrpigmasmldamlsraridaridles
    grissqdfseitntckaiealkrqg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6t0vC (C:)
    gsgsgsgsgmerikelmemvknsrmreiltttsvdhmavikkytsgrqeknpalrmkwmm
    amkypisassriremipekdedgntlwtntkdagsnrvlvspnavtwwnragpvsdvvhy
    prvykmyfdrlerlthgtfgpvkfynqvkvrkrvdinpghkdltsreaqevimevvfpne
    vgartlssdaqltitkekkeelknckispimvaymlerelvrrtrflpiagatsstyvev
    lhltqgtcweqqytpggeaenddldqtliiasrnivrrsivaidplasllsmchttsiss
    eplveilrsnptdeqavnickaalgirinnsfsfggynfkrvkgssqrtekavltgnlqt
    ltmtifegyeefnvsgkrasavlkkgaqrliqaiiggrtledilnlmitlmvfsqeekml
    kavrgdlnfvnranqrlnpmyqllrhfqkdsstllknwgteeidpimgiagimpdgtink
    tqtlmgvrlsqggvdeysfnerirvnidkylrvrnekgellispeevseaqgqeklpiny
    nsslmwevngpesiltntyhwiiknwellktqwmtdptvlynriefepfqtlipkgnrai
    ysgftrtlfqqmrdvegtfdsiqiikllpfsahppslgrtqfssftlnirgaplrllirg
    nsqvfnynqmenviivlgksvgspersiltesssiesavlrgflilgkanskygpvltig
    eldklgrgekanvligqgdtvlvmkrkrdssiltdsqtalkrirleeskgwshpqfekgg
    gsgggsggsawshpqfekgrsggenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6t0vC (C:)
    sgmerikelmemvknsrmreiltttsvdhmavikkytsgrqeknpalrmkwmmamkypis
    assriremipekdedgntlwtntkdagsnrvlvspnavtwwnragpvsdvvhyprvykmy
    fdrlerlthgtfgpvkfynqvkvrkrvdinpghkdltsreaqevimevvfpnevgartls
    sdaqltitkekkeelknckispimvaymlerelvrrtrflpiagatsstyvevlhltqgt
    cweqqytpggeaenddldqtliiasrnivrrsivaidplasllsmchttsisseplveil
    rsnptdeqavnickaalgirinnsfsfggynfkrvkgssqrtekavltgnlqtltmtife
    gyeefnvsgkrasavlkkgaqrliqaiiggrtledilnlmitlmvfsqeekmlkavrgdl
    nfvnranqrlnpmyqllrhfqkdsstllknwgteeidpimgiagimpdgtinktqtlmgv
    rlsqggvdeysfnerirvnidkylrvrnekgellispeevseaqgqeklpinynsslmwe
    vngpesiltntyhwiiknwellktqwmtdptvlynriefepfqtlipkgnraiysgftrt
    lfqqmrdvegtfdsiqiikllpfsahppslgrtqfssftlnirgaplrllirgnsqvfny
    nqmenviivlgksvgspersiltesssiesavlrgflilgkanskygpvltigeldklgr
    gekanvligqgdtvlvmkrk
    

  • Chain 'M':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'V':
    No sequence available.