PDB entry 6t0d
View 6t0d on RCSB PDB site
Description: Crystal structure of YTHDC1 with fragment 27 (DHU_DC1_256)
Class: RNA binding protein
Keywords: Fragment, Complex, YTHDC1, Epitranscriptomic, RNA BINDING PROTEIN
Deposited on
2019-10-02, released
2020-03-04
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-04-01, with a file datestamp of
2020-03-27.
Experiment type: XRAY
Resolution: 1.43 Å
R-factor: N/A
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ythdc1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6t0da1, d6t0da2 - Chain 'B':
Compound: ythdc1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6t0db1, d6t0db2 - Heterogens: M4N, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6t0dA (A:)
mhhhhhhssgrenlyfqgtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekk
lnlafrsarsvilifsvresgkfqgfarlsseshhggspihwvlpagmsakmlggvfkid
wicrrelpftksahltnpwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihk
mrh
Sequence, based on observed residues (ATOM records): (download)
>6t0dA (A:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhgpihwvlmlggvfkidwicrrelpftksahltnpwnehkpvk
igrdgqeielecgtqlcllfppdesidlyqvihkm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6t0dB (B:)
mhhhhhhssgrenlyfqgtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekk
lnlafrsarsvilifsvresgkfqgfarlsseshhggspihwvlpagmsakmlggvfkid
wicrrelpftksahltnpwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihk
mrh
Sequence, based on observed residues (ATOM records): (download)
>6t0dB (B:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm