PDB entry 6szu

View 6szu on RCSB PDB site
Description: bat influenza a polymerase pre-termination complex with pyrophosphate using 44-mer vrna template with mutated oligo(u) sequence
Deposited on 2019-10-02, released 2020-04-15
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: EM
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase acidic protein
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: PA
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM92 (14-726)
      • expression tag (727)
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polymerase basic protein 2
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM90 (9-End)
      • expression tag (7-8)
  • Chain 'M':
    Compound: mRNA
    Species: Influenza B virus, synthetic [TaxId:11520]
  • Chain 'V':
    Compound: vRNA
    Species: Influenza B virus, synthetic [TaxId:11520]
  • Heterogens: M4H, MG, POP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6szuA (A:)
    gshhhhhhhhgsgsmenfvrtnfnpmileraektmkeygenpqnegnkfaaisthmevcf
    mysdfhfidlegntivkendddnamlkhrfeiiegqerniawtivnsicnmtenskprfl
    pdlydyktnkfieigvtrrkvedyyyekasklkgenvyihifsfdgeematddeyildee
    srariktrlfvlrqelataglwdsfrqsekgeetleeefsypptfqrlanqslppsfkdy
    hqfkayvssfkangnieaklgamsekvnaqiesfdprtirelelpegkfctqrskfllmd
    amklsvlnpahegegipmkdakacldtfwgwkkatiikkhekgvntnylmiweqllesik
    emegkflnlkktnhlkwglgegqapekmdfedckevpdlfqykseppekrklaswiqsef
    nkaseltnsnwiefdelgndvapiehiasrrrnfftaevsqcraseyimkavyintalln
    ssctameeyqvipiitkcrdtsgqrrtnlygfiikgrshlrndtdvvnfislefsltdpr
    neihkwekycvleigdmeirtsistimkpvylyvrtngtskikmkwgmemrrcllqslqq
    vesmieaesavkekdmtepffrnrendwpigespqgiekgtigkvcrvllaksvfnsiya
    saqlegfsaesrklllliqafrdnldpgtfdlkglyeaieeciindpwvllnaswfnsfl
    kavqlsmgsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6szuA (A:)
    menfvrtnfnpmileraektmkeygenpqnegnkfaaisthmevcfmysdfhfidlegnt
    ivkenmlkhrfeiiegqerniawtivnsicnmtenskprflpdlydyktnkfieigvtrr
    kvedyyyekasklkgenvyihifsfdgeematddeyildeesrariktrlfvlrqelata
    glwdsfrqsekleeefsypptfqrlanqslppsfkdyhqfkayvssfkangnieaklgam
    sekvnaqiesfdprtirelelpegkfctqrskfllmdamklsvlnpahegegipmkdaka
    cldtfwgwkkatiikkhekgvntnylmiweqllesikemegkflnlkktnhlkwglgegq
    apekmdfedckevpdlfqykseppekrklaswiqsefnkaseltnsnwiefdelgndvap
    iehiasrrrnfftaevsqcraseyimkavyintallnssctameeyqvipiitkcrdtsg
    qrrtnlygfiikgrshlrndtdvvnfislefsltdprneihkwekycvleigdmeirtsi
    stimkpvylyvrtngtskikmkwgmemrrcllqslqqvesmieaesavkekdmtepffrn
    rendwpigespqgiekgtigkvcrvllaksvfnsiyasaqlegfsaesrklllliqafrd
    nldpgtfdlkglyeaieeciindpwvllnaswfnsflkavqlsmg
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6szuB (B:)
    gsgsgsgsgmdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyss
    rgiwktnsetgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqeti
    daiqqtrvdkltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvl
    lsfendsmevtthfqkkkrirdnhskkmitqrtigkkrvkltkknyliraltlntmtkda
    ergklkrraiatpgmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmma
    kstdeelsytitgdntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarl
    grgymfesksmhlrtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgm
    fnmlstvlgvsvlnlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtck
    lvginmsqkksyinktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttvik
    tnminndlgpataqmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllv
    adggpnpynlrnlhipevclkwslmdpdyrgrlcnpnnpfvhhmevestnlavvmpahgp
    aksleydavatthswtpkrnrsilntnqrgilederiyqkccqvfekffpsstyrrpigm
    asmldamlsraridaridlesgrissqdfseitntckaiealkrqgsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6szuB (B:)
    mdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyssrgiwktnse
    tgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqetidaiqqtrvd
    kltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvllsfendsme
    vtthfqkkkrirdnhskkmitqrtigkkrvkltkknyliraltlntmtkdaergklkrra
    iatpgmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmmakstdeelsy
    titgdntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarlgrgymfesk
    smhlrtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgmfnmlstvlg
    vsvlnlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtcklvginmsqk
    ksyinktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttviktnminndlg
    pataqmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllvadggpnpyn
    lrnlhipevclkwslmdpdyrgrlcnpnnpfvhhmevestnksleydavatthswtpkrn
    rsilntnqrgilederiyqkccqvfekffpsstyrrpigmasmldamlsraridaridle
    sgrissqdfseitntckaiealkrq
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6szuC (C:)
    gsgsgsgsgmerikelmemvknsrmreiltttsvdhmavikkytsgrqeknpalrmkwmm
    amkypisassriremipekdedgntlwtntkdagsnrvlvspnavtwwnragpvsdvvhy
    prvykmyfdrlerlthgtfgpvkfynqvkvrkrvdinpghkdltsreaqevimevvfpne
    vgartlssdaqltitkekkeelknckispimvaymlerelvrrtrflpiagatsstyvev
    lhltqgtcweqqytpggeaenddldqtliiasrnivrrsivaidplasllsmchttsiss
    eplveilrsnptdeqavnickaalgirinnsfsfggynfkrvkgssqrtekavltgnlqt
    ltmtifegyeefnvsgkrasavlkkgaqrliqaiiggrtledilnlmitlmvfsqeekml
    kavrgdlnfvnranqrlnpmyqllrhfqkdsstllknwgteeidpimgiagimpdgtink
    tqtlmgvrlsqggvdeysfnerirvnidkylrvrnekgellispeevseaqgqeklpiny
    nsslmwevngpesiltntyhwiiknwellktqwmtdptvlynriefepfqtlipkgnrai
    ysgftrtlfqqmrdvegtfdsiqiikllpfsahppslgrtqfssftlnirgaplrllirg
    nsqvfnynqmenviivlgksvgspersiltesssiesavlrgflilgkanskygpvltig
    eldklgrgekanvligqgdtvlvmkrkrdssiltdsqtalkrirleeskgwshpqfekgg
    gsgggsggsawshpqfekgrsggenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6szuC (C:)
    sgmerikelmemvknsrmreiltttsvdhmavikkytsgrqeknpalrmkwmmamkypis
    assriremipekdedgntlwtntkdagsnrvlvspnavtwwnragpvsdvvhyprvykmy
    fdrlerlthgtfgpvkfynqvkvrkrvdinpghkdltsreaqevimevvfpnevgartls
    sdaqltitkekkeelknckispimvaymlerelvrrtrflpiagatsstyvevlhltqgt
    cweqqytpg
    

  • Chain 'M':
    No sequence available.

  • Chain 'V':
    No sequence available.