PDB entry 6swe

View 6swe on RCSB PDB site
Description: ic2 head of cryo-em structure of a full archaeal ribosomal translation initiation complex devoid of aif1 in p. abyssi
Deposited on 2019-09-20, released 2020-02-19
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '2':
    Compound: 16S ribosomal RNA
    Species: PYROCOCCUS ABYSSI GE5 [TaxId:272844]
  • Chain '3':
    Compound: 50S ribosomal protein L7Ae
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: initiator Met-tRNA fMet from E. coli (A1U72 variant)
    Species: Escherichia coli [TaxId:562]
  • Chain '6':
    Compound: translation initiation factor 1a
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Gene: eIF1A, aif1A, PYRAB05910, PAB2441
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 30S ribosomal protein S7
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 30S ribosomal protein S9
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 30S ribosomal protein S10
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 30S ribosomal protein S13
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 30s ribosomal protein s14 type z
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 30S ribosomal protein S17e
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 30S ribosomal protein S19
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 30S ribosomal protein S19E
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 30S ribosomal protein S28E
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 30S ribosomal protein S27ae
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 30S ribosomal protein S3
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '2':
    No sequence available.

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records:
    >6swe3 (3:)
makpsyvkfevpkelaekalqaveiardtgkirkgtnettkavergqaklviiaedvdpe
eivahlpplceekeipyiyvpskkelgaaagievaaasvaiiepgkardlveeiamkvre
lmk

  • Chain '4':
    No sequence available.

  • Chain '6':
    Sequence, based on SEQRES records:
    >6swe6 (6:)
mpkkerkvegdevirvplpegnqlfgvveqalgagwmdvrcedgkirrcripgklrrrvw
irvgdlvivqpwpvqsdkrgdivyrytqtqvdwllrkgkitqefltggsllve

    Sequence, based on observed residues (ATOM records):
    >6swe6 (6:)
virvplpegnqlfgvveqalgagwmdvrcedgkirrcripgklrrrvwirvgdlvivqpw
pvqsdkrgdivyrytqtqvdwllrkgkitqefltg

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6sweH (H:)
makplserffipheikvmgrwstedvevrdpslkpyinleprllphthgrhakkhfgkan
vhiverlinkimrsggshykvaghfmrrehrslnskkvkayevvkeafkiiekrtgknpi
qvlvwaienaapredttsvmfggiryhvavdispmrrldvalrnialgasakcyrtkmsf
aealaeeiilaankdpksyayskkleieriaessr

    Sequence, based on observed residues (ATOM records):
    >6sweH (H:)
kplserffipheikvmgrwstedvevrdpslkpyinleprllphthgrhakkhfgkanvh
iverlinkimrsggshykvaghfmrrehrslnskkvkayevvkeafkiiekrtgknpiqv
lvwaienaapredttsvmfggiryhvavdispmrrldvalrnialgasakcyrtkmsfae
alaeeiilaankdpksyayskkleieriaessr

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6sweK (K:)
mriiqttgkrktaiaraviregkgrvringkpvelvepeiarftileplilageeiwnsv
didvkvqgggfmgqaeaariaiaralvewtgdmnlkekfikydrtmlvgdprrtephkpn
rstkgprakrqksyr

    Sequence, based on observed residues (ATOM records):
    >6sweK (K:)
riiqttgkrktaiaraviregkgrvringkpvelvepeiarftileplilageeiwnsvd
idvkvqgggfmgqaeaariaiaralvewtgdmnlkekfikydrtmlvgdprrtephkpnr
stkgprakrqksyr

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6sweL (L:)
mqkariklastnvrsleevanqikqiaertgvrmsgpiplptkririvtrkspdgegsat
fdrwelrihkrlidieaderamrqimrirvpedvtieielis

    Sequence, based on observed residues (ATOM records):
    >6sweL (L:)
mqkariklastnvrsleevanqikqiaertgvrmsgpiplptkririvtrkspdgegsat
fdrwelrihkrlidieaderamrqimrirvpedvtieieli

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6sweO (O:)
madfrhivrvagvdldgnkqlrwaltaikgvginfatmvcrvagldpfmkagyltdeqvk
kieeilqdpvahgiprwavnrpkdyetgrdlhlitakldmairedimrlrrirayrgirh
elglpvrgqrtrsnfrrgqtvgvsrkkk

    Sequence, based on observed residues (ATOM records):
    >6sweO (O:)
dfrhivrvagvdldgnkqlrwaltaikgvginfatmvcrvagldpfmkagyltdeqvkki
eeilqdpvahgiprwavnrpkdyetgrdlhlitakldmairedimrlrrirayrgirhel
glpvrgqrtrsnfrrgqtvgvsr

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6sweP (P:)
makadynkrkprkfgkgarrcircgqygpiirihglmlcrhcfrevapklgfrkye

    Sequence, based on observed residues (ATOM records):
    >6sweP (P:)
akadynkrkprkfgkgarrcircgqygpiirihglmlcrhcfrevapklgfrkye

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6sweS (S:)
mgkirqgfikrvarelfnkypneftrdfehnkkkveeltnvtskkirnriagyitklvrm
keegkil

    Sequence, based on observed residues (ATOM records):
    >6sweS (S:)
gkirqgfikrvarelfnkypneftrdfehnkkkveeltnvtskkirnriagyitklvrmk
eegkil

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6sweT (T:)
markefryrgytleqlmnmsleelakllparqrrslkrgltpeqkkllrkirlakkgkyn
kpirthcrdmivlpemvgltiyvhngkefvpveikpemighylgefaptrkrvqhgapgi
gatrssmfvavk

    Sequence, based on observed residues (ATOM records):
    >6sweT (T:)
rkefryrgytleqlmnmsleelakllparqrrslkrgltpeqkkllrkirlakkgkynkp
irthcrdmivlpemvgltiyvhngkefvpveikpemighylgefaptrkrvqhgapgiga
trssmfvavk

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6sweU (U:)
matvydvpgdllvervaqrlkeipeikppewapfvktgrhkerlpeqedwwyyrvasilr
rvyldgpvgierlrtyyggrknrghaperfykaggsiirkalqqleaagfvekvpgkgrv
itpkgrsfldkiatelkkeleeiipelkky

    Sequence, based on observed residues (ATOM records):
    >6sweU (U:)
atvydvpgdllvervaqrlkeipeikppewapfvktgrhkerlpeqedwwyyrvasilrr
vyldgpvgierlrtyyggrknrghaperfykaggsiirkalqqleaagfvekvpgkgrvi
tpkgrsfldkiatelkkeleeiipelkky

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6sweX (X:)
maedegypaevieiigrtgttgdvtqvkvrilegrdkgrvirrnvrgpvrvgdililret
ereareiksrr

    Sequence, based on observed residues (ATOM records):
    >6sweX (X:)
egypaevieiigrtgttgdvtqvkvrilegrdkgrvirrnvrgpvrvgdililreterea
reiksrr

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6sweY (Y:)
mgqkwklyivkdgkvirknkfcprcgpgvfmadhgdrwacgrcgytewkkk

    Sequence, based on observed residues (ATOM records):
    >6sweY (Y:)
mgqkwklyivkdgkvirknkfcprcgpgvfmadhgdrwacgrcgytewkk

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6sweZ (Z:)
maieryfireavkemlideflekelrragyggldikktplgtkviifaanpgyvigrggr
rireltrilerqfglenpqidvqeiknpylnakvqavriaqalergihfrraayaamrai
msngargveirisgkltgeraksvrfyqgylakvgnpaetlvskgyaqallklgvigvkv
aimppdarlpdeieiiekpveeevssneae

    Sequence, based on observed residues (ATOM records):
    >6sweZ (Z:)
aieryfireavkemlideflekelrragyggldikktplgtkviifaanpgyvigrggrr
ireltrilerqfglenpqidvqeiknpylnakvqavriaqalergihfrraayaamraim
sngargveirisgkltgeraksvrfyqgylakvgnpaetlvskgyaqallklgvigvkva
imppdarlpdeieiiek