PDB entry 6stu

View 6stu on RCSB PDB site
Description: Adenovirus 30 Fiber Knob protein
Class: viral protein
Keywords: Adenovirus, Type 29, Sialic Acid, 3D Structure, Fiber Knob, viral protein
Deposited on 2019-09-11, released 2020-09-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.39 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fiber
    Species: Human adenovirus 30 [TaxId:46932]
    Gene: L5
    Database cross-references and differences (RAF-indexed):
    • Uniprot M0QTV3
      • conflict (4)
      • conflict (7-8)
    Domains in SCOPe 2.08: d6stua_
  • Chain 'B':
    Compound: Fiber
    Species: Human adenovirus 30 [TaxId:46932]
    Gene: L5
    Database cross-references and differences (RAF-indexed):
    • Uniprot M0QTV3 (Start-207)
      • conflict (7-8)
    Domains in SCOPe 2.08: d6stub_
  • Chain 'C':
    Compound: Fiber
    Species: Human adenovirus 30 [TaxId:46932]
    Gene: L5
    Database cross-references and differences (RAF-indexed):
    • Uniprot M0QTV3 (0-End)
      • conflict (0-1)
      • conflict (4)
      • conflict (7-8)
    Domains in SCOPe 2.08: d6stuc_
  • Chain 'D':
    Compound: Fiber
    Species: Human adenovirus 30 [TaxId:46932]
    Gene: L5
    Database cross-references and differences (RAF-indexed):
    • Uniprot M0QTV3
      • conflict (7-8)
    Domains in SCOPe 2.08: d6stud_
  • Chain 'E':
    Compound: Fiber
    Species: Human adenovirus 30 [TaxId:46932]
    Gene: L5
    Database cross-references and differences (RAF-indexed):
    • Uniprot M0QTV3
      • conflict (7-8)
    Domains in SCOPe 2.08: d6stue_
  • Chain 'F':
    Compound: Fiber
    Species: Human adenovirus 30 [TaxId:46932]
    Gene: L5
    Database cross-references and differences (RAF-indexed):
    • Uniprot M0QTV3 (Start-207)
      • conflict (4)
      • conflict (7-8)
    Domains in SCOPe 2.08: d6stuf_
  • Heterogens: GLU, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6stuA (A:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedkne

    Sequence, based on observed residues (ATOM records): (download) 
    >6stuA (A:)
knndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninnetn
pgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstaypki
inngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfawnkt
yknvpfdsssltfsyiaqdaedkn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6stuB (B:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedkne

    Sequence, based on observed residues (ATOM records): (download) 
    >6stuB (B:)
ndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninnetnpg
edykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstaypkiin
ngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfawnktyk
nvpfdsssltfsyiaqdaedkne

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6stuC (C:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedkne

    Sequence, based on observed residues (ATOM records): (download) 
    >6stuC (C:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6stuD (D:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedkne

    Sequence, based on observed residues (ATOM records): (download) 
    >6stuD (D:)
ndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninnetnpg
edykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstaypkiin
ngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfawnktyk
nvpfdsssltfsyiaqdaedk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6stuE (E:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedkne

    Sequence, based on observed residues (ATOM records): (download) 
    >6stuE (E:)
ndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninnetnpg
edykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstaypkiin
ngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfawnktyk
nvpfdsssltfsyiaqdaedk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6stuF (F:)
vgnknndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninn
etnpgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstay
pkiinngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfaw
nktyknvpfdsssltfsyiaqdaedkne

    Sequence, based on observed residues (ATOM records): (download) 
    >6stuF (F:)
knndkltlwttpdpspnckvseekdskltlvltkcgsqilasvsllvvkgkfaninnetn
pgedykkfsvkllfdangklltgssldgnywnyknkdsvigspyenavpfmpnstaypki
inngtanpedkksaakktivtnvylggdagqpvattvsfnketesncvysitfdfawnkt
yknvpfdsssltfsyiaqdaedkne