PDB entry 6ssk

View 6ssk on RCSB PDB site
Description: human endogenous retrovirus (hml2) mature capsid assembly, d5 capsule
Deposited on 2019-09-08, released 2020-01-01
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: EM
Resolution: 3.18 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'B':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'C':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'D':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'E':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'F':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'G':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'H':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)
  • Chain 'I':
    Compound: Endogenous retrovirus group K member 24 Gag polyprotein
    Species: Homo sapiens [TaxId:9606]
    Gene: ERVK-24
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63145 (0-End)
      • conflict (58)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6sskA (A:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskA (A:)
pvtlepvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilaks
slspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneai
eqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkviv
elmayenanpecqsaikplkgkvpagsdviseyvkacdgig

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6sskB (B:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskB (B:)
pvtlepmtvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweila
ksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqne
aieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkv
ivelmayenanpecqsaikplkgkvpagsdviseyvkacdgig

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6sskC (C:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskC (C:)
pvtleptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilak
sslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqnea
ieqvraiclrawekiqpsfntvrqgskepypdfvarlqdvaqksiadekarkvivelmay
enanpecqsaikplkgkvpagsdviseyvkacdgig

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6sskD (D:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskD (D:)
pvtlepvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilaks
slspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneai
eqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkviv
elmayenanpecqsaikplkgkvpagsdviseyvkacdgigg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6sskE (E:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskE (E:)
pvtlepvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilaks
slspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneai
eqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkviv
elmayenanpecqsaikplkgkvpagsdviseyvkacdgigg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6sskF (F:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskF (F:)
pvtlevearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilakss
lspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneaie
qvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkvive
lmayenanpecqsaikplkgkvpagsdviseyvkacdgigg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6sskG (G:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskG (G:)
pvtlepvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilaks
slspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneai
eqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkviv
elmayenanpecqsaikplkgkvpagsdviseyvkacdgigg

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6sskH (H:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskH (H:)
pvtlvearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilakssl
spsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneaieq
vraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkvivel
mayenanpecqsaikplkgkvpagsdviseyvkacdgigg

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6sskI (I:)
pvtlepmppgegaqegepptvearyksfsikmlkdmkegvkqygpnspymrtlldsiahg
hrlipydweilaksslspsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnw
stisqqalmqneaieqvraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdva
qksiadekarkvivelmayenanpecqsaikplkgkvpagsdviseyvkacdgiggamhk
amlmaqle

    Sequence, based on observed residues (ATOM records):
    >6sskI (I:)
pvtleearyksfsikmlkdmkegvkqygpnspymrtlldsiahghrlipydweilakssl
spsqflqfktwwidgvqeqvrrnraanppvnidadqllgigqnwstisqqalmqneaieq
vraiclrawekiqdpgsacpsfntvrqgskepypdfvarlqdvaqksiadekarkvivel
mayenanpecqsaikplkgkvpagsdviseyvkacdgigg