PDB entry 6ssi

View 6ssi on RCSB PDB site
Description: Structure of the pentameric ligand-gated ion channel ELIC in complex with a PAM nanobody
Class: transport protein
Keywords: ion channel, cys-loop receptor, pentameric ligand gated ion channel, lgic, elic, nanobody, transport protein
Deposited on 2019-09-07, released 2020-02-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-02-12, with a file datestamp of 2020-02-07.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cys-loop ligand-gated ion channel
    Species: Dickeya chrysanthemi [TaxId:556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C7B7
      • insertion (159)
      • conflict (284)
  • Chain 'B':
    Compound: cys-loop ligand-gated ion channel
    Species: Dickeya chrysanthemi [TaxId:556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C7B7 (3-End)
      • expression tag (2)
      • insertion (159)
      • conflict (284)
  • Chain 'C':
    Compound: cys-loop ligand-gated ion channel
    Species: Dickeya chrysanthemi [TaxId:556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C7B7 (3-End)
      • expression tag (2)
      • insertion (159)
      • conflict (284)
  • Chain 'D':
    Compound: cys-loop ligand-gated ion channel
    Species: Dickeya chrysanthemi [TaxId:556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C7B7 (3-End)
      • expression tag (2)
      • insertion (159)
      • conflict (284)
  • Chain 'E':
    Compound: cys-loop ligand-gated ion channel
    Species: Dickeya chrysanthemi [TaxId:556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C7B7
      • insertion (159)
      • conflict (284)
  • Chain 'F':
    Compound: nanobody 22
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SSI (0-End)
    Domains in SCOPe 2.07: d6ssif1, d6ssif2
  • Chain 'G':
    Compound: nanobody 22
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SSI (0-End)
    Domains in SCOPe 2.07: d6ssig1, d6ssig2, d6ssig3
  • Chain 'H':
    Compound: nanobody 22
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SSI (0-End)
    Domains in SCOPe 2.07: d6ssih1, d6ssih2, d6ssih3
  • Chain 'I':
    Compound: nanobody 22
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SSI (0-End)
    Domains in SCOPe 2.07: d6ssii1, d6ssii2, d6ssii3
  • Chain 'J':
    Compound: nanobody 22
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SSI (0-End)
    Domains in SCOPe 2.07: d6ssij1, d6ssij2
  • Heterogens: ABU, MES, GOL, CA, PG4, UMQ, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6ssiF (F:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvsshhhhhhepe
a

    Sequence, based on observed residues (ATOM records): (download) 
    >6ssiF (F:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvs

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6ssiG (G:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvsshhhhhhepe
a

    Sequence, based on observed residues (ATOM records): (download) 
    >6ssiG (G:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvss

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6ssiH (H:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvsshhhhhhepe
a

    Sequence, based on observed residues (ATOM records): (download) 
    >6ssiH (H:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvssh

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >6ssiI (I:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvsshhhhhhepe
a

    Sequence, based on observed residues (ATOM records): (download) 
    >6ssiI (I:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvss

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >6ssiJ (J:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvsshhhhhhepe
a

    Sequence, based on observed residues (ATOM records): (download) 
    >6ssiJ (J:)
qvqlqesggglaqaggsmrlsciasgrnffinimnwyrqapgkqrelvaqitragtttya
dsvkgrftisrdnakntvylqmstlqsedtavyycnvgaswgqgtqvtvs