PDB entry 6sqj

View 6sqj on RCSB PDB site
Description: crystal structure of glycoprotein d of equine herpesvirus type 1
Deposited on 2019-09-04, released 2020-09-30
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycoprotein d
    Species: Equid alphaherpesvirus 1 [TaxId:10326]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: glycoprotein d
    Species: Equid alphaherpesvirus 1 [TaxId:10326]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6sqjA (A:)
    ekakravrgrqdrpkefppprynytiltrynatalaspfindqvknvdlrivtatrpcem
    ialiaktnidsilkelaaaqktysarltwfkimptcatpihdvsymkcnpklsfamcder
    sdilwqaslitmaaetddelglvlaapahsasglyrrvieidgrriytdfsvtipsercp
    iafeqnfgnpdrcktpeqysrgevftrrflgefnfpqgehmtwlkfwfvydggnlpvqfy
    eaqafarpvppdnhpgfdsveseitqnktdpkpgqadpkpnqpfkwpsikhlaprldevd
    eviepvtkppktsksnstfenlyfqghhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6sqjA (A:)
    grqdrpkefppprynytiltrynatalaspfivdlrivtatrpcemialiaktnidsilk
    elaaaqktysarltwfkimptcatpihdvsymkcnpklsfamcdersdilwqaslitmaa
    etddelglvlaapahsasglyrrvieidgrriytdfsvtipsercpiafeqnfgnpdrck
    tpeqysrgevftrrflgefnfpqgehmtwlkfwfvydggnlpvqfyeaqafarpvp
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6sqjB (B:)
    ekakravrgrqdrpkefppprynytiltrynatalaspfindqvknvdlrivtatrpcem
    ialiaktnidsilkelaaaqktysarltwfkimptcatpihdvsymkcnpklsfamcder
    sdilwqaslitmaaetddelglvlaapahsasglyrrvieidgrriytdfsvtipsercp
    iafeqnfgnpdrcktpeqysrgevftrrflgefnfpqgehmtwlkfwfvydggnlpvqfy
    eaqafarpvppdnhpgfdsveseitqnktdpkpgqadpkpnqpfkwpsikhlaprldevd
    eviepvtkppktsksnstfenlyfqghhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6sqjB (B:)
    qdrpkefppprynytiltrynatalaspfindqvknvdlrivtatrpcemialiaktnid
    silkelaaaqktysarltwfkimptcatpihdvsymkcnpklsfamcdersdilwqasli
    tmaaetddelglvlaapahsasglyrrvieidgrriytdfsvtipsercpiafeqnfgnp
    drcktpeqysrgevftrrflgefnfpqgehmtwlkfwfvydggnlpvqfyeaqafa