PDB entry 6soj

View 6soj on RCSB PDB site
Description: bamabcde in msp1d1 nanodisc ensemble 1-8
Deposited on 2019-08-29, released 2020-12-16
The last revision was dated 2020-12-16, with a file datestamp of 2020-12-11.
Experiment type: EM
Resolution: 10.4 Å
R-factor: N/A
AEROSPACI score: -0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein assembly factor BamA
    Species: Escherichia coli [TaxId:562]
    Gene: bamA, yaeT, ECS88_0187
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Outer membrane protein assembly factor BamB
    Species: Escherichia coli [TaxId:562]
    Gene: bamB, C4J69_10710
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Outer membrane protein assembly factor BamC
    Species: Escherichia coli [TaxId:562]
    Gene: bamC, C9186_08245
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Outer membrane protein assembly factor BamD
    Species: Escherichia coli [TaxId:562]
    Gene: bamD, yfiO, Z3889, ECs3458
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Outer membrane protein assembly factor BamE
    Species: Escherichia coli [TaxId:562]
    Gene: bamE, smpA, c3139
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6sojA (A:)
fvvkdihfeglqrvavgaallsmpvrtgdtvndedisntiralfatgnfedvrvlrdgdt
llvqvkerptiasitfsgnksvkddmlkqnleasgvrvgesldrttiadiekgledfyys
vgkysasvkavvtplprnrvdlklvfqegvsaeiqqinivgnhafttdelishfqlrdev
pwwnvvgdrkyqkqklagdletlrsyyldrgyarfnidstqvsltpdkkgiyvtvniteg
dqyklsgvevsgnlaghsaeieqltkiepgelyngtkvtkmeddikkllgrygyayprvq
smpeindadktvklrvnvdagnrfyvrkirfegndtskdavlrremrqmegawlgsdlvd
qgkerlnrlgffetvdtdtqrvpgspdqvdvvykvkerntgsfnfgigygtesgvsfqag
vqqdnwlgtgyavgingtkndyqtyaelsvtnpyftvdgvslggrlfyndfqaddadlsd
ytnksygtdvtlgfpineynslraglgyvhnslsnmqpqvamwrylysmgehpstsdqdn
sfktddftfnygwtynkldrgyfptdgsrvnltgkvtipgsdneyykvtldtatyvpidd
dhkwvvlgrtrwgygdglggkempfyenfyaggsstvrgfqsntigpkavyfphqasnyd
pdydyecatqdgakdlcksddavggnamavaslefitptpfisdkyansvrtsffwdmgt
vwdtnwdssqysgypdysdpsnirmsagialqwmsplgplvfsyaqpfkkydgdkaeqfq
fni

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6sojB (B:)
lfnseedvvkmsplptvenqftpttawstsvgsgignfysnlhpaladnvvyaadraglv
kalnaddgkeiwsvslaekdgwfskepallsggvtvsgghvyigsekaqvyalntsdgtv
awqtkvagealsrpvvsdglvlihtsngqlqalneadgavkwtvnldmpslslrgesapt
tafgaavvggdngrvsavlmeqgqmiwqqrisqatgsteidrlsdvdttpvvvngvvfal
ayngnltaldlrsgqimwkrelgsvndfivdgnriylvdqndrvmaltidggvtlwtqsd
llhrlltspvlyngnlvvgdsegylhwinvedgrfvaqqkvdssgfqtepvaadgklliq
akdgtvysitr

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6sojC (C:)
cssdsrykrqvsgdeayleaaplaelhapagmilpvtsgdyaipvtngsgavgkaldir

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6sojD (D:)
evpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadl
plaqaaidrfirlnpthpnidyvmymrgltnmalddsalqgffgvdrsdrdpqharaafs
dfsklvrgypnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdy
pdtqatrdalplmenayrqmqmnaqaekvakiiaanss

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6sojE (E:)
ervvyrpdinqgnyltandvskirvgmtqqqvayalgtplmsdpfgtntwfyvfrqqpgh
egvtqqtltltfnssgvltnidnkpal