PDB entry 6snw

View 6snw on RCSB PDB site
Description: structure of coxsackievirus a10 complexed with its receptor kremen1
Deposited on 2019-08-27, released 2020-01-15
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Coxsackievirus VP2
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Coxsackievirus VP4
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: kremen protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: KREMEN1, KREMEN, KRM1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6snwA (A:)
gdpvediihdalsstvrraitsgqdvntaagtapsshrletgrvpalqaaetgatsnatd
enmietrcvmnrngvleatishffsrsglvgvvnltdggtdttgyavwdidimgfvqlrr
kcemftymrfnaeftfvtttengearpfmlqymyvppgapkptgrdafqwqtatnpsvfv
kltdppaqvsvpfmspasayqwfydgyptfgqhpetsnttygqcpnnmmgtfavrvvsrv
asqlklqtrvymklkhvrawiprpirsqpyllknfpnydsskitysardrasikqanm

    Sequence, based on observed residues (ATOM records):
    >6snwA (A:)
dpvediihdalsstvrtsgqdvntaagtapsshrletgrvpalqaaetgatsnatdenmi
etrcvmnrngvleatishffsrsglvgvvnltdggtdttgyavwdidimgfvqlrrkcem
ftymrfnaeftfvtttengearpfmlqymyvppgapkptgrdafqwqtatnpsvfvkltd
ppaqvsvpfmspasayqwfydgyptfgqhpetsnttygqcpnnmmgtfavrvvsrvasql
klqtrvymklkhvrawiprpirsqpyllknfpnydsskitysardrasikqan

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6snwB (B:)
spsveacgysdrvaqltvgnssittqeaanivlaygewpeycpdtdatavdkptrpdvsv
nrfytldskmwqenstgwywkfpdvlnktgvfgqnaqfhylyrsgfclhvqcnaskfhqg
allvavipefvlagrgsntkpneaphpgfnttfpgtagasfndpyvldsgvplsqsliyp
hqwinlrtnncatiivpyinavpfdsainhsnfglivvpvsplkyssgattaipitvtia
plnsefgglrqavsq

    Sequence, based on observed residues (ATOM records):
    >6snwB (B:)
sdrvaqltvgnssittqeaanivlaygewpeycpdtdatavdkptrpdvsvnrfytldsk
mwqenstgwywkfpdvlnktgvfgqnaqfhylyrsgfclhvqcnaskfhqgallvavipe
fvlagrgsntkpneaphpgfnttfpgtagasfndpyvldsgvplsqsliyphqwinlrtn
ncatiivpyinavpfdsainhsnfglivvpvsplkyssgattaipitvtiaplnsefggl
rqavsq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6snwC (C:)
glptelrpgtnqfltteddtaapilpgfsptpsihipgevrsllelcrvetilevnnttd
atglnrllipvsaqnkadelcaafmvdpgrigpwqstlvgqicryytqwsgslkvtfmft
gsfmatgkmliaysppgsaqpanretamlgthviwdfglqssvslvipwisnthfrtakt
ggnydyytagvvtlwyqtnyvvppetpgeayiiamgaaqdnftlkickdtdevtqqavlq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6snwD (D:)
mgaqvssqrsgshetgnvatggstinftninyykdsyaasasrqdftqdpkkftqpvlds
irelsapln

    Sequence, based on observed residues (ATOM records):
    >6snwD (D:)
tninyykdsyaasasrqdftqdpkkftqpvldsirelsapl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6snwE (E:)
etgapspglgpgpecftangadyrgtqnwtalqggkpclfwnetfqhpyntlkypngegg
lgehnycrnpdgdvspwcyvaehedgvywkyceipacqmpgnlgcykdhgnpppltgtsk
tsnkltiqtcisfcrsqrfkfagmesgyacfcgnnpdywkygeaastecnsvcfgdhtqp
cggdgriilfdtlvgacggnysamssvvyspdfpdtyatgrvcywtirvpgashihfsfp
lfdirdsadmvelldgythrvlarfhgrsrpplsfnvsldfvilyffsdrinqaqgfavl
yqavkeegsenlyfqggslpqerpavnqtvaeviteqanlsvsaarsskvlyvittspsh
ppqtvpgthhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6snwE (E:)
gpecftangadyrgtqnwtalqggkpclfwnetfqhpyntlkypngegglgehnycrnpd
gdvspwcyvaehedgvywkyceipacqmpgnlgcykdhgnpppltgtsktsnkltiqtci
sfcrsqrfkfagmesgyacfcgnnpdywkygeaastecnsvcfgdhtqpcggdgriilfd
tlvgacggnysamssvvyspdfpdtyatgrvcywtirvpgashihfsfplfdirdsadmv
elldgythrvlarfhgrsrpplsfnvsldfvilyffsdrinqaqgfavlyqavk