PDB entry 6snh

View 6snh on RCSB PDB site
Description: cryo-em structure of yeast alg6 in complex with 6ag9 fab and dol25-p- glc
Deposited on 2019-08-24, released 2020-03-11
The last revision was dated 2020-04-01, with a file datestamp of 2020-03-27.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: 6AG9 Fab heavy chain
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNH
  • Chain 'L':
    Compound: 6AG9 Fab light chain
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNH
  • Chain 'X':
    Compound: Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: ALG6, YOR002W, UNA544
    Database cross-references and differences (RAF-indexed):
  • Heterogens: LMH, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6snhH (H:)
eisevqlvesggglvqpggslrlscaasgfnvysssihwvrqapgkglewvasissysgy
tsyadsvkgrftisadtskntaylqmnslraedtavyycareywswysysygidywgqgt
lvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfp
avlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdktht

    Sequence, based on observed residues (ATOM records):
    >6snhH (H:)
vqlvesggglvqpggslrlscaasgfnvysssihwvrqapgkglewvasissysgytsya
dsvkgrftisadtskntaylqmnslraedtavyycareywswysysygidywgqgtlvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6snhL (L:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsywvgypitfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records):
    >6snhL (L:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsywvgypitfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6snhX (X:)
gpggstgrlagaggefvdmaigkrllvnkpaeesfyaspmydflypfrpvgnqwlpeyii
fvcavilrctiglgpysgkgspplygdfeaqrhwmeitqhlplskwywydlqywgldypp
ltafhsyllgligsffnpswfaleksrgfespdnglktymrstviisdilfyfpaviyft
kwlgryrnqspigqsiaasailfqpslmlidhghfqynsvmlgltayainnlldeyyama
avcfvlsicfkqmalyyapiffayllsrsllfpkfniarltviafatlatfaiifaplyf
lggglknihqcihrifpfargifedkvanfwcvtnvfvkykerftiqqlqlysliatvig
flpamimtllhpkkhllpyvliacsmsfflfsfqvhektilipllpitllysstdwnvls
lvswinnvalftlwpllkkdglhlqyavsfllsnwlignfsfitprflpksltpgpsiss
insdyrrrsllpynvvwksfiigtyiamgfyhfldqfvappskypdlwvllncavgficf
sifwlwsyykiftsgsksmkdl

    Sequence, based on observed residues (ATOM records):
    >6snhX (X:)
peyiifvcavilrctiglgpysgkgspplygdfeaqrhwmeitqhlplskwywydlqywg
ldyppltafhsyllgligsffnpswfaleksrgfespdnglktymrstviisdilfyfpa
viyftkwlgryrnqspigqsiaasailfqpslmlidhghfqynsvmlgltayainnllde
yyamaavcfvlsicfkqmalyyapiffayllsrsllfpkfniarltviafatlatfaiif
aplyflggglknihqcihrifpfargifedkvanfwcvtnvfvkykerftiqqlqlysli
atvigflpamimtllhpkkhllpyvliacsmsfflfsfqvhektilipllpitllysstd
wnvlslvswinnvalftlwpllkkdglhlqyavsfllsnwlignfsllpynvvwksfiig
tyiamgfyhfldqfvappskypdlwvllncavgficfsifwlwsyykiftsgsksmkdl