PDB entry 6sne

View 6sne on RCSB PDB site
Description: crystal structure of ln01 fab in complex with an hiv-1 gp41 peptide
Deposited on 2019-08-23, released 2019-11-06
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LN01 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE (0-End)
  • Chain 'B':
    Compound: LN01 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE
  • Chain 'C':
    Compound: LN01 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE (0-End)
  • Chain 'D':
    Compound: LN01 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE
  • Chain 'E':
    Compound: LN01 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE (0-End)
  • Chain 'F':
    Compound: LN01 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE
  • Chain 'H':
    Compound: LN01 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE
  • Chain 'J':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: LN01 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SNE (0-End)
  • Chain 'N':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PC, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6sneA (A:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrggc

    Sequence, based on observed residues (ATOM records):
    >6sneA (A:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6sneB (B:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepkscdtts

    Sequence, based on observed residues (ATOM records):
    >6sneB (B:)
vqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgttyy
npslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgrg
hfvavswastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepks

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6sneC (C:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrggc

    Sequence, based on observed residues (ATOM records):
    >6sneC (C:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6sneD (D:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepkscdtts

    Sequence, based on observed residues (ATOM records):
    >6sneD (D:)
vqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgttyy
npslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgrg
hfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepks

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6sneE (E:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrggc

    Sequence, based on observed residues (ATOM records):
    >6sneE (E:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfn

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6sneF (F:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepkscdtts

    Sequence, based on observed residues (ATOM records):
    >6sneF (F:)
vqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgttyy
npslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgrg
hfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepks

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6sneH (H:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepkscdtts

    Sequence, based on observed residues (ATOM records):
    >6sneH (H:)
vqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgttyy
npslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgrg
hfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepks

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6sneJ (J:)
gqnqqekneqelleldkwaslwnwfnitnwlwyiklfimivgglvglrivfavlsvvnrv
rqg

    Sequence, based on observed residues (ATOM records):
    >6sneJ (J:)
slwnwfnitnwlwyiklfimivgglvglrivfav

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6sneL (L:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrggc

    Sequence, based on observed residues (ATOM records):
    >6sneL (L:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgg

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6sneN (N:)
gqnqqekneqelleldkwaslwnwfnitnwlwyiklfimivgglvglrivfavlsvvnrv
rqg

    Sequence, based on observed residues (ATOM records):
    >6sneN (N:)
wnwfnitnwlwyiklfimivgglvglrivfavlsvvnrvrq

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6sneO (O:)
gqnqqekneqelleldkwaslwnwfnitnwlwyiklfimivgglvglrivfavlsvvnrv
rqg

    Sequence, based on observed residues (ATOM records):
    >6sneO (O:)
nwfnitnwlwyiklfimivgglvglrivfavlsvvnrvr

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6sneP (P:)
gqnqqekneqelleldkwaslwnwfnitnwlwyiklfimivgglvglrivfavlsvvnrv
rqg

    Sequence, based on observed residues (ATOM records):
    >6sneP (P:)
waslwnwfnitnwlwyiklfimivgglvglrivfavlsvvnrvr