SCOPe 2.08: Structural Classification of Proteins

PDB entry 6snd

View 6snd on RCSB PDB site
Description: crystal structure of ln01 fab in complex with an hiv-1 gp41 peptide
Deposited on 2019-08-23, released 2019-11-06
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: LN01 light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6SND (0-212)
Chain 'B':
Compound: LN01 heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6SND
Chain 'C':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Uniprot G3DH64 (0-18)
Chain 'H':
Compound: LN01 heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6SND (0-End)
Chain 'L':
Compound: LN01 light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6SND (0-212)
Chain 'P':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Uniprot G3DH64 (0-18)
Heterogens: DPV, PC, PSF, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence; same for both SEQRES and ATOM records:

>6sndA (A:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgg

Chain 'B':
Sequence, based on SEQRES records:

>6sndB (B:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepkscdtts

Sequence, based on observed residues (ATOM records):

>6sndB (B:)
vqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgttyy
npslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgrg
hfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepksc

Chain 'C':
Sequence, based on SEQRES records:
```
>6sndC (C:)
nwfditnwlwyiklfimivkkkkkk
```
Sequence, based on observed residues (ATOM records):
```
>6sndC (C:)
nwfditnwlwyiklfimiv
```

Chain 'H':
Sequence, based on SEQRES records:

>6sndH (H:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepkscdtts

Sequence, based on observed residues (ATOM records):

>6sndH (H:)
evqlvesgpglvqpwgtlsltcrvsgdsvsndnyywawirqtpgrelqvigtiyysgtty
ynpslrnrvtisldksvnvvslrlgsvsaadtaqyycvrmpshgfwstsfsywyfdlwgr
ghfvavswastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvdhkpsntkvdkkvepks

Chain 'L':
Sequence; same for both SEQRES and ATOM records:

>6sndL (L:)
diqmtqspsslsasvgdkvtitcrasqsvtkylnwyqfktgqapriliygtytllsgvsp
rfsgagsgslytltitniqpedfatyycqqahstpwtfgqgthvaanrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgg

Chain 'P':
Sequence, based on SEQRES records:
```
>6sndP (P:)
nwfditnwlwyiklfimivkkkkkk
```
Sequence, based on observed residues (ATOM records):
```
>6sndP (P:)
nwfditnwlwyiklfimiv
```