PDB entry 6smo

View 6smo on RCSB PDB site
Description: AntDE:AntF (apo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide
Class: protein binding
Keywords: Natural Product Biosynthesis, Polyketides, Minimal PKS System, Anthraquinone, Chain Elongation, Catalysis, PROTEIN BINDING
Deposited on 2019-08-22, released 2020-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-11, with a file datestamp of 2020-11-06.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acyl carrier protein
    Species: Photorhabdus luminescens [TaxId:29488]
    Gene: C6H68_21855
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: PKS_KS domain-containing protein
    Species: Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) [TaxId:243265]
    Gene: plu4191
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6smob1, d6smob2
  • Chain 'C':
    Compound: Ketoacyl_synth_N domain-containing protein
    Species: Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) [TaxId:243265]
    Gene: plu4190
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: PKS_KS domain-containing protein
    Species: Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) [TaxId:243265]
    Gene: plu4191
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6smod1, d6smod2
  • Chain 'E':
    Compound: Ketoacyl_synth_N domain-containing protein
    Species: Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) [TaxId:243265]
    Gene: plu4190
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: PKS_KS domain-containing protein
    Species: Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) [TaxId:243265]
    Gene: plu4191
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6smof1, d6smof2
  • Chain 'G':
    Compound: Ketoacyl_synth_N domain-containing protein
    Species: Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) [TaxId:243265]
    Gene: plu4190
    Database cross-references and differences (RAF-indexed):
  • Heterogens: LKZ, NA, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6smoB (B:)
gsshhhhhhsgdpasmiinnrnesqprrvvvtglgvvaptgvgvnefwnnihngksgvsk
yewgrerfgfksgaigqvygsdgnnkefvlkserkylqfaldaaemamqdanlrpsdidg
rrfgvaiataiadaagmeecllritkggkenihpdliksedydsfdfssaatsvakkyga
smsvsnistgcaagldalgiamehirygradimlagaseaplcplsigsfealgalssre
lenqqaatcpfslerdgfviaegcgililesyehakqrgahiyaelagyasvnnayhmtd
lpadgmamarcidmalkdaqispstvnyisahgsstaqndinesnaikfvlgesafgipi
nslksmtghalaaanaiesvalcleiekqyvhptinyqtpdpdcdldyipnqgcsypikt
alklssgfsgihsvivmravdna

    Sequence, based on observed residues (ATOM records): (download) 
    >6smoB (B:)
qprrvvvtglgvvaptgvgvnefwnnihngksgvskyewgrerfgfksgaigqvyfvlks
erkylqfaldaaemamqdanlrpsdidgrrfgvaiataiadaagmeecllritkggkeni
hpdliksedydsfdfssaatsvakkygasmsvsnistgcaagldalgiamehirygradi
mlagaseaplcplsigsfealgalssrelenqqaatcpfslerdgfviaegcgililesy
ehakqrgahiyaelagyasvnnayhmtdlpadgmamarcidmalkdaqispstvnyisah
gsstaqndinesnaikfvlgesafgipinslksmtghalaaanaiesvalcleiekqyvh
ptinyqtpdpdcdldyipnqgcsypiktalklssgfsgihsvivmrav

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6smoD (D:)
gsshhhhhhsgdpasmiinnrnesqprrvvvtglgvvaptgvgvnefwnnihngksgvsk
yewgrerfgfksgaigqvygsdgnnkefvlkserkylqfaldaaemamqdanlrpsdidg
rrfgvaiataiadaagmeecllritkggkenihpdliksedydsfdfssaatsvakkyga
smsvsnistgcaagldalgiamehirygradimlagaseaplcplsigsfealgalssre
lenqqaatcpfslerdgfviaegcgililesyehakqrgahiyaelagyasvnnayhmtd
lpadgmamarcidmalkdaqispstvnyisahgsstaqndinesnaikfvlgesafgipi
nslksmtghalaaanaiesvalcleiekqyvhptinyqtpdpdcdldyipnqgcsypikt
alklssgfsgihsvivmravdna

    Sequence, based on observed residues (ATOM records): (download) 
    >6smoD (D:)
qprrvvvtglgvvaptgvgvnefwnnihngksgvskyewgrerfgfksgaigqvyfvlks
erkylqfaldaaemamqdanlrpsdidgrrfgvaiataiadaagmeecllritkggkeni
hpdliksedydsfdfssaatsvakkygasmsvsnistgcaagldalgiamehirygradi
mlagaseaplcplsigsfealgalssrelenqqaatcpfslerdgfviaegcgililesy
ehakqrgahiyaelagyasvnnayhmtdlpadgmamarcidmalkdaqispstvnyisah
gsstaqndinesnaikfvlgesafgipinslksmtghalaaanaiesvalcleiekqyvh
ptinyqtpdpdcdldyipnqgcsypiktalklssgfsgihsvivmravdn

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6smoF (F:)
gsshhhhhhsgdpasmiinnrnesqprrvvvtglgvvaptgvgvnefwnnihngksgvsk
yewgrerfgfksgaigqvygsdgnnkefvlkserkylqfaldaaemamqdanlrpsdidg
rrfgvaiataiadaagmeecllritkggkenihpdliksedydsfdfssaatsvakkyga
smsvsnistgcaagldalgiamehirygradimlagaseaplcplsigsfealgalssre
lenqqaatcpfslerdgfviaegcgililesyehakqrgahiyaelagyasvnnayhmtd
lpadgmamarcidmalkdaqispstvnyisahgsstaqndinesnaikfvlgesafgipi
nslksmtghalaaanaiesvalcleiekqyvhptinyqtpdpdcdldyipnqgcsypikt
alklssgfsgihsvivmravdna

    Sequence, based on observed residues (ATOM records): (download) 
    >6smoF (F:)
qprrvvvtglgvvaptgvgvnefwnnihngksgvskyewgrerfgfksgaigqvyvlkse
rkylqfaldaaemamqdanlrpsdidgrrfgvaiataiadaagmeecllritkggkenih
pdliksedydsfdfssaatsvakkygasmsvsnistgcaagldalgiamehirygradim
lagaseaplcplsigsfealgalssrelenqqaatcpfslerdgfviaegcgililesye
hakqrgahiyaelagyasvnnayhmtdlpadgmamarcidmalkdaqispstvnyisahg
sstaqndinesnaikfvlgesafgipinslksmtghalaaanaiesvalcleiekqyvhp
tinyqtpdpdcdldyipnqgcsypiktalklssgfsgihsvivmravd

  • Chain 'G':
    No sequence available.