PDB entry 6sln

View 6sln on RCSB PDB site
Description: structure of the ragab peptide transporter
Deposited on 2019-08-20, released 2020-05-20
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RagA protein
    Species: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) [TaxId:242619]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RagA protein
    Species: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) [TaxId:242619]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Lipoprotein RagB
    Species: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) [TaxId:242619]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Lipoprotein RagB
    Species: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) [TaxId:242619]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: gln-thr-ala-gly-ala-asn-ser-gln-arg-gly-ser-ala-gly
    Species: Porphyromonas gingivalis W83, synthetic [TaxId:242619]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SLN (0-12)
  • Chain 'Q':
    Compound: gln-thr-ala-gly-ala-asn-ser-gln-arg-gly-ser-ala-gly
    Species: Porphyromonas gingivalis W83, synthetic [TaxId:242619]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SLN (0-12)
  • Heterogens: 3PE, LMT, C8E, PLM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6slnA (A:)
qnrtvkgtvissednepliganvvvvgnttigaatdldgnftlsvpanakmlrvsysgmt
tkevaianvmkivldpdskvleqvvvlgygtgqklstvsgsvakvsseklaekpvanimd
alqgqvagmqvmttsgdptavasveihgtgslgassaplyivdgmqtsldvvatmnpndf
esmsvlkdasatsiygaraangvvfiqtkkgkmsergritfnasygisqilntkpldnmm
tgdelldfqvkagfwgnnqtvqkvkdmilagaedlygnydslkdeygktlfpvdfnhdad
wlkalfktaptsqgdisfsggsqgtsyyasigyfdqegmarepanfkrysgrlnfesrin
ewlkvganlsgaianrrsadyfgkyymgsgtfgvltmpryynpfdvngdladvyymygat
rpsmtepyfakmrpfsseshqanvngfaqitpikgltlkaqagvditntrtsskrmpnnp
ydstplgerrerayrdvsksftntaeykfsidekhdltalmgheyieyegdvigasskgf
esdklmllsqgktgnslslpehrvaeyaylsffsrfnygfdkwmyidfsvrndqssrfgs
nnrsawfysvggmfdiynkfiqesnwlsdlrlkmsygttgnseignynhqalvtvnnyte
damglsistagnpdlswekqsqfnfglaagafnnrlsaevdfyvrttndmlidvpmpyis
gffsqyqnvgsmkntgvdlslkgtiyqnkdwnvyasanfnynrqeitklffglnkymlpn
tgtiweigypnsfymaeyagidkktgkqlwyvpgqvdadgnkvttsqysadletridksv
tppitggfslgaswkglsldadfayivgkwminndryftenggglmqlnkdkmllnawte
dnketdvpklgqspqfdthllenasflrlknlkltyvlpnslfagqnviggarvylmarn
lltvtkykgfdpeaggnvgknqypnskqyvagiqlsf

    Sequence, based on observed residues (ATOM records):
    >6slnA (A:)
lstvsgsvakvsseklaekpvanimdalqgqvagmqvmttsgdptavasveihgtgslga
ssaplyivdgmqtsldvvatmnpndfesmsvlkdasatsiygaraangvvfiqtkkgkms
ergritfnasygisqilntkpldnmmtgdelldfqvkagfwgnnqtvqkvkdmilagaed
lygnydslkdeygktlfpvdfnhdadwlkalfktaptsqgdisfsggsqgtsyyasigyf
dqegmarepanfkrysgrlnfesrinewlkvganlsgaianrrsadyfgkyymgsgtfgv
ltmpryynpfdvngdladvyymygatrpsmtepyfakmrpfsseshqanvngfaqitpik
gltlkaqagvditntrtsskrmpnnpydstplgerrerayrdvsksftntaeykfsidek
hdltalmgheyieyegdvigasskgfesdklmllsqgktgnslslpehrvaeyaylsffs
rfnygfdkwmyidfsvrndqssrfgsnnrsawfysvggmfdiynkfiqesnwlsdlrlkm
sygttgnseignynhqalvtvnnytedamglsistagnpdlswekqsqfnfglaagafnn
rlsaevdfyvrttndmlidvpmpyisgffsqyqnvgsmkntgvdlslkgtiyqnkdwnvy
asanfnynrqeitklffglnkymlpntgtiweigypnsfymaeyagidkktgkqlwyvpg
qvdadgnkvttsqysadletridksvtppitggfslgaswkglsldadfayivgkwminn
dryftenggglmqlnkdkmllnawtednketdvpklgqspqfdthllenasflrlknlkl
tyvlpnslfagqnviggarvylmarnlltvtkykgfdpeaggnvgknqypnskqyvagiq
lsf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6slnB (B:)
qnrtvkgtvissednepliganvvvvgnttigaatdldgnftlsvpanakmlrvsysgmt
tkevaianvmkivldpdskvleqvvvlgygtgqklstvsgsvakvsseklaekpvanimd
alqgqvagmqvmttsgdptavasveihgtgslgassaplyivdgmqtsldvvatmnpndf
esmsvlkdasatsiygaraangvvfiqtkkgkmsergritfnasygisqilntkpldnmm
tgdelldfqvkagfwgnnqtvqkvkdmilagaedlygnydslkdeygktlfpvdfnhdad
wlkalfktaptsqgdisfsggsqgtsyyasigyfdqegmarepanfkrysgrlnfesrin
ewlkvganlsgaianrrsadyfgkyymgsgtfgvltmpryynpfdvngdladvyymygat
rpsmtepyfakmrpfsseshqanvngfaqitpikgltlkaqagvditntrtsskrmpnnp
ydstplgerrerayrdvsksftntaeykfsidekhdltalmgheyieyegdvigasskgf
esdklmllsqgktgnslslpehrvaeyaylsffsrfnygfdkwmyidfsvrndqssrfgs
nnrsawfysvggmfdiynkfiqesnwlsdlrlkmsygttgnseignynhqalvtvnnyte
damglsistagnpdlswekqsqfnfglaagafnnrlsaevdfyvrttndmlidvpmpyis
gffsqyqnvgsmkntgvdlslkgtiyqnkdwnvyasanfnynrqeitklffglnkymlpn
tgtiweigypnsfymaeyagidkktgkqlwyvpgqvdadgnkvttsqysadletridksv
tppitggfslgaswkglsldadfayivgkwminndryftenggglmqlnkdkmllnawte
dnketdvpklgqspqfdthllenasflrlknlkltyvlpnslfagqnviggarvylmarn
lltvtkykgfdpeaggnvgknqypnskqyvagiqlsf

    Sequence, based on observed residues (ATOM records):
    >6slnB (B:)
lstvsgsvakvsseklaekpvanimdalqgqvagmqvmttsgdptavasveihgtgslga
ssaplyivdgmqtsldvvatmnpndfesmsvlkdasatsiygaraangvvfiqtkkgkms
ergritfnasygisqilntkpldnmmtgdelldfqvkagfwgnnqtvqkvkdmilagaed
lygnydslkdeygktlfpvdfnhdadwlkalfktaptsqgdisfsggsqgtsyyasigyf
dqegmarepanfkrysgrlnfesrinewlkvganlsgaianrrsadyfgkyymgsgtfgv
ltmpryynpfdvngdladvyymygatrpsmtepyfakmrpfsseshqanvngfaqitpik
gltlkaqagvditntrtsskrmpnnpydstplgerrerayrdvsksftntaeykfsidek
hdltalmgheyieyegdvigasskgfesdklmllsqgktgnslslpehrvaeyaylsffs
rfnygfdkwmyidfsvrndqssrfgsnnrsawfysvggmfdiynkfiqesnwlsdlrlkm
sygttgnseignynhqalvtvnnytedamglsistagnpdlswekqsqfnfglaagafnn
rlsaevdfyvrttndmlidvpmpyisgffsqyqnvgsmkntgvdlslkgtiyqnkdwnvy
asanfnynrqeitklffglnkymlpntgtiweigypnsfymaeyagidkktgkqlwyvpg
qvdadgnkvttsqysadletridksvtppitggfslgaswkglsldadfayivgkwminn
dryftenggglmqlnkdkmllnawtednketdvpklgqspqfdthllenasflrlknlkl
tyvlpnslfaqnviggarvylmarnlltvtkykgfdpeaggnvgknqypnskqyvagiql
sf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6slnC (C:)
celdrdpegkdfqqpytsfvqtkqnrdglyallrntenprmhfyqelqsdmycttitdgn
slapfvnwdlgilndhgradedevsgiagyyfvynrlnqqanafvnnteaalqnqvykns
teianaksflaegkvlqalaiwrlmdrfsfhesvtevnsgakdlgvillkeynpgyigpr
atkaqcydyilsrlseaievlpenresvlyvsrdyayalrariylalgeygkaaadakmv
vdkypligaadasefeniyrsdannpeiifrgfasatlgsftattlngaapagkdikynp
savpfqwvvdlyenedfrksvyiakvvkkdkgylvnkfledkayrdvqdkpnlkvgaryf
svaevylilvesalqtgdtptaekylkalskargaevsvvnmealqaertreligegsrl
rdmvrwsipnnhdafetqpglegfanttplkaqapvgfyaytwefpqrdrqtnpqliknw
pihhhhhh

    Sequence, based on observed residues (ATOM records):
    >6slnC (C:)
celdrdpegkdfqqpytsfvqtkqnrdglyallrntenprmhfyqelqsdmycttitdgn
slapfvnwdlgilndhgradedevsgiagyyfvynrlnqqanafvnnteaalqnqvykns
teianaksflaegkvlqalaiwrlmdrfsfhesvtevnsgakdlgvillkeynpgyigpr
atkaqcydyilsrlseaievlpenresvlyvsrdyayalrariylalgeygkaaadakmv
vdkypligaadasefeniyrsdannpeiifrgfasatlgsftattlngaapagkdikynp
savpfqwvvdlyenedfrksvyiakvvkkdkgylvnkfledkayrdvqdkpnlkvgaryf
svaevylilvesalqtgdtptaekylkalskargaevsvvnmealqaertreligegsrl
rdmvrwsipnnhdafetqpglegfanttplkaqapvgfyaytwefpqrdrqtnpqliknw
p

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6slnD (D:)
celdrdpegkdfqqpytsfvqtkqnrdglyallrntenprmhfyqelqsdmycttitdgn
slapfvnwdlgilndhgradedevsgiagyyfvynrlnqqanafvnnteaalqnqvykns
teianaksflaegkvlqalaiwrlmdrfsfhesvtevnsgakdlgvillkeynpgyigpr
atkaqcydyilsrlseaievlpenresvlyvsrdyayalrariylalgeygkaaadakmv
vdkypligaadasefeniyrsdannpeiifrgfasatlgsftattlngaapagkdikynp
savpfqwvvdlyenedfrksvyiakvvkkdkgylvnkfledkayrdvqdkpnlkvgaryf
svaevylilvesalqtgdtptaekylkalskargaevsvvnmealqaertreligegsrl
rdmvrwsipnnhdafetqpglegfanttplkaqapvgfyaytwefpqrdrqtnpqliknw
pihhhhhh

    Sequence, based on observed residues (ATOM records):
    >6slnD (D:)
celdrdpegkdfqqpytsfvqtkqnrdglyallrntenprmhfyqelqsdmycttitdgn
slapfvnwdlgilndhgradedevsgiagyyfvynrlnqqanafvnnteaalqnqvykns
teianaksflaegkvlqalaiwrlmdrfsfhesvtevnsgakdlgvillkeynpgyigpr
atkaqcydyilsrlseaievlpenresvlyvsrdyayalrariylalgeygkaaadakmv
vdkypligaadasefeniyrsdannpeiifrgfasatlgsftattlngaapagkdikynp
savpfqwvvdlyenedfrksvyiakvvkkdkgylvnkfledkayrdvqdkpnlkvgaryf
svaevylilvesalqtgdtptaekylkalskargaevsvvnmealqaertreligegsrl
rdmvrwsipnnhdafetqpglegfanttplkaqapvgfyaytwefpqrdrqtnpqliknw
pi

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6slnP (P:)
qtagansqrgsag

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6slnQ (Q:)
qtagansqrgsag