PDB entry 6sk8

View 6sk8 on RCSB PDB site
Description: deltac3 c-terminal truncation of hsnmt1 in complex with myrcoa and gdcfskpr substrates
Deposited on 2019-08-14, released 2020-03-18
The last revision was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: XRAY
Resolution: 1.87 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycylpeptide N-tetradecanoyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: NMT1, NMT
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glycylpeptide N-tetradecanoyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: NMT1, NMT
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Apoptosis-inducing factor 3
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SK8 (Start-7)
  • Chain 'D':
    Compound: Apoptosis-inducing factor 3
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6SK8 (0-7)
  • Heterogens: MYA, GOL, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6sk8A (A:)
ggsefsvgqgpaktmeeaskrsyqfwdtqpvpklgevvnthgpvepdkdnirqepytlpq
gftwdaldlgdrgvlkelytllnenyvedddnmfrfdyspefllwalrppgwlpqwhcgv
rvvssrklvgfisaipanihiydtekkmveinflcvhkklrskrvapvlireitrrvhle
gifqavytagvvlpkpvgtcrywhrslnprklievkfshlsrnmtmqrtmklyrlpetpk
taglrpmetkdipvvhqlltrylkqfhltpvmsqeevehwfypqeniidtfvvenangev
tdflsfytlpstimnhpthkslkaaysfynvhtqtplldlmsdalvlakmkgfdvfnald
lmenktfleklkfgigdgnlqyylynwkcpsmgaekvgl

    Sequence, based on observed residues (ATOM records):
    >6sk8A (A:)
gqgpaktmeeaskrsyqfwdtqpvpklgevvnthgpvepdkdnirqepytlpqgftwdal
dlgdrgvlkelytllnenyvedddnmfrfdyspefllwalrppgwlpqwhcgvrvvssrk
lvgfisaipanihiydtekkmveinflcvhkklrskrvapvlireitrrvhlegifqavy
tagvvlpkpvgtcrywhrslnprklievkfshlsrnmtmqrtmklyrlpetpktaglrpm
etkdipvvhqlltrylkqfhltpvmsqeevehwfypqeniidtfvvenangevtdflsfy
tlpstimnhpthkslkaaysfynvhtqtplldlmsdalvlakmkgfdvfnaldlmenktf
leklkfgigdgnlqyylynwkcpsmgaekvgl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6sk8B (B:)
ggsefsvgqgpaktmeeaskrsyqfwdtqpvpklgevvnthgpvepdkdnirqepytlpq
gftwdaldlgdrgvlkelytllnenyvedddnmfrfdyspefllwalrppgwlpqwhcgv
rvvssrklvgfisaipanihiydtekkmveinflcvhkklrskrvapvlireitrrvhle
gifqavytagvvlpkpvgtcrywhrslnprklievkfshlsrnmtmqrtmklyrlpetpk
taglrpmetkdipvvhqlltrylkqfhltpvmsqeevehwfypqeniidtfvvenangev
tdflsfytlpstimnhpthkslkaaysfynvhtqtplldlmsdalvlakmkgfdvfnald
lmenktfleklkfgigdgnlqyylynwkcpsmgaekvgl

    Sequence, based on observed residues (ATOM records):
    >6sk8B (B:)
paktmeeaskrsyqfwdtqpvpklgevvnthgpvepdkdnirqepytlpqgftwdaldlg
drgvlkelytllnenyvedddnmfrfdyspefllwalrppgwlpqwhcgvrvvssrklvg
fisaipanihiydtekkmveinflcvhkklrskrvapvlireitrrvhlegifqavytag
vvlpkpvgtcrywhrslnprklievkfshlsmtmqrtmklyrlpetpktaglrpmetkdi
pvvhqlltrylkqfhltpvmsqeevehwfypqeniidtfvvenangevtdflsfytlpst
imnhpthkslkaaysfynvhtqtplldlmsdalvlakmkgfdvfnaldlmenktfleklk
fgigdgnlqyylynwkcpsmgaekvgl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6sk8C (C:)
gdcfskpr

    Sequence, based on observed residues (ATOM records):
    >6sk8C (C:)
dcfskpr

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6sk8D (D:)
gdcfskpr