PDB entry 6sk7

View 6sk7 on RCSB PDB site
Description: Cryo-EM structure of rhinovirus-A89
Class: virus
Keywords: RV-A89, HRV-B5, virus, capsid protein
Deposited on 2019-08-14, released 2019-09-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-09-04, with a file datestamp of 2019-08-30.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP1 capsid protein
    Species: Human rhinovirus A serotype 89 (strain 41467-Gallo) [TaxId:650130]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6sk7a_
  • Chain 'B':
    Compound: VP2 capsid protein
    Species: Human rhinovirus A serotype 89 (strain 41467-Gallo) [TaxId:650130]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: VP3 capsid protein
    Species: Human rhinovirus A serotype 89 (strain 41467-Gallo) [TaxId:650130]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6sk7c_
  • Chain 'D':
    Compound: VP4 capsid protein
    Species: Human rhinovirus A serotype 89 (strain 41467-Gallo) [TaxId:650130]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6sk7A (A:)
npvenyidsvlnevlvvpniqpstsvsshaapaldaaetghtssvqpedmietryvitdq
trdetsiesflgrsgciamiefntssdktehdkigkgfktwkvslqemaqirrkyelfty
trfdseitivtaaaaqgndsghivlqfmyvppgapvpekrddytwqsgtnasvfwqegqp
yprftipfmsiasayymfydgydgdsaaskygsvvtndmgticvrivtsnqkhdsnivcr
iyhkakhikawcprppravayqhthstnyipsngeattqiktrpdvftvtnvgpssmf

    Sequence, based on observed residues (ATOM records): (download) 
    >6sk7A (A:)
npvenyidsvlnevlvvpniqpstsvsshaapaldaaetghtssvqpedmietryvitdq
trdetsiesflgrsgciamiefntssdktehdkigkgfktwkvslqemaqirrkyelfty
trfdseitivtaaaaqgndsghivlqfmyvppgapvpekrddytwqsgtnasvfwqegqp
yprftipfmsiasayymfydgydgdsaaskygsvvtndmgticvrivtsnqkhdsnivcr
iyhkakhikawcprppravayqhthstnyipsngeattqiktrpd

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6sk7C (C:)
glpvmltpgsgqflttddtqspsafpyfhptkeifipgqvrnliemcqvdtlipvnntqe
nvrsvnmytvdlrtqvdlakevfsipvdiasqplattligelasyythwtgslrfsfmfc
gsasstlklliaytppgvgkpksrreamlgthlvwdvglqstaslvvpwvsashfrfttp
dtyssagyitcwyqtnfvvpdstpdnakmvcmvsackdfclrlardtnlhtqegvltq

    Sequence, based on observed residues (ATOM records): (download) 
    >6sk7C (C:)
spsafpyfhptkeifipgqvrnliemcqvdtlipvnntqenvrsvnmytvdlrtqvdlak
evfsipvdiasqplattligelasyythwtgslrfsfmfcgsasstlklliaytppgvgk
pksrreamlgthlvwdvglqstaslvvpwvsashfrfttpdtyssagyitcwyqtnfvvp
dstpdnakmvcmvsackdfclrlardtnlhtqeg

  • Chain 'D':
    No sequence available.