PDB entry 6sj6

View 6sj6 on RCSB PDB site
Description: cryo-em structure of 50s-rsfs complex from staphylococcus aureus
Deposited on 2019-08-12, released 2020-04-08
The last revision was dated 2020-07-08, with a file datestamp of 2020-07-03.
Experiment type: EM
Resolution: 3.23 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 50S ribosomal protein L28
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain '1':
    Compound: 50S ribosomal protein L29
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: 50S ribosomal protein L30
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: 50S ribosomal protein L32
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: 50S ribosomal protein L34
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain '7':
    Compound: 50S ribosomal protein L35
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain '9':
    Compound: Ribosomal silencing factor RsfS
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Gene: rsfS, SAOUHSC_01695
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: 23S ribosomal RNA
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
  • Chain 'B':
    Compound: 5S ribosomal RNA
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
  • Chain 'D':
    Compound: 50S ribosomal protein L2
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L3
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L4
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 50S ribosomal protein L13
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L14
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L15
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L16
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L17
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L18
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L19
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L20
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L21
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L22
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 50S ribosomal protein L23
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L24
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L25
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L27
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, K

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '0':
    Sequence, based on SEQRES records:
    >6sj60 (0:)
    mgkqcfvtgrkastgnrrshalnstkrrwnanlqkvrilvdgkpkkvwvsaralksgkvt
    rv
    

    Sequence, based on observed residues (ATOM records):
    >6sj60 (0:)
    astgnrrshalnstkrrwnanlqkvrilvdgkpkkvwvsaralk
    

  • Chain '1':
    Sequence, based on SEQRES records:
    >6sj61 (1:)
    mkakeirdlttseieeqiksskeelfnlrfqlatgqleetarirtvrktiarlktvarer
    eieqskanq
    

    Sequence, based on observed residues (ATOM records):
    >6sj61 (1:)
    kakeirdlttseieeqiksskeelfnlrfqlatgqleetarirtvrktiarlktvarere
    ieqsk
    

  • Chain '2':
    Sequence, based on SEQRES records:
    >6sj62 (2:)
    maklqitltrsvigrpetqrktvealglkktnssvvvednpairgqinkvkhlvtveek
    

    Sequence, based on observed residues (ATOM records):
    >6sj62 (2:)
    aklqitltrsvigrpetqrktvealglkktnssvvvednpairgqinkvkhlvtvee
    

  • Chain '4':
    Sequence, based on SEQRES records:
    >6sj64 (4:)
    mavpkrrtsktrknkrrthfkisvpgmtecpncgreyklshrvckncgsyngeevaak
    

    Sequence, based on observed residues (ATOM records):
    >6sj64 (4:)
    avpkrrtsktrknkrrthfkisvpgmteeyklsh
    

  • Chain '6':
    Sequence, based on SEQRES records:
    >6sj66 (6:)
    mvkrtyqpnkrkhskvhgfrkrmstkngrkvlarrrrkgrkvlsa
    

    Sequence, based on observed residues (ATOM records):
    >6sj66 (6:)
    vkrtyqpnkrkhskvhgfrkrmstkngrkvlarrrrkgrkvlsa
    

  • Chain '7':
    Sequence, based on SEQRES records:
    >6sj67 (7:)
    mpkmkthrgaakrvkrtasgqlkrsraftshlfankstkqkrqlrkarlvsksdmkrvkq
    llaykk
    

    Sequence, based on observed residues (ATOM records):
    >6sj67 (7:)
    pkmkthrgaakrvkrtasgqlkrsraftshlfankstkqkrqlrkarlvsksdmkrvkql
    la
    

  • Chain '9':
    Sequence, based on SEQRES records:
    >6sj69 (9:)
    mnsqellaiavdaidnkkgedtislemkgisdmtdyfvvthgnnerqvqaiaravkevan
    eqnievkrmegynearwilidladvvvhvfhkdernyynieklyqdaplesysqvay
    

    Sequence, based on observed residues (ATOM records):
    >6sj69 (9:)
    mnsqellaiavdaidnkkgedtislemkgisdmtdyfvvthgnnerqvqaiaravkevan
    eqnievkrmegynearwilidladvvvhvfhkdernyynieklyqdaplesy
    

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6sj6D (D:)
    maikkykpitngrrnmtsldfaeitkttpeksllkplpkkagrnnqgkltvrhhggghkr
    qyrvidfkrnkdginakvdsiqydpnrsanialvvyadgekryiiapkglevgqivesga
    eadikvgnalplqnipvgtvvhnielkpgkggqiarsagasaqvlgkegkyvlirlrsge
    vrmilstcratigqvgnlqhelvnvgkagrsrwkgirptvrgsvmnpndhphgggegrap
    igrpspmspwgkptlgkktrrgkkssdklivrgrkkk
    

    Sequence, based on observed residues (ATOM records):
    >6sj6D (D:)
    aikkykpitngrrnmtsldfaeitkttpeksllkplpkkagrnnqgkltvrhhggghkrq
    yrvidfkrnkdginakvdsiqydpnrsanialvvyadgekryiiapkglevgqivesgae
    adikvgnalplqnipvgtvvhnielkpgkggqiarsagasaqvlgkegkyvlirlrsgev
    rmilstcratigqvgnlqhelvnvgkagrsrwkgirptvrggkktrrgkkssdklivrgr
    kk
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6sj6E (E:)
    mtkgilgrkigmtqvfgengelipvtvveakenvvlqkktvevdgynaiqvgfedkkayk
    kdaksnkyankpaeghakkadaapkrfirefrnvdvdayevgqevsvdtfvagdvidvtg
    vskgkgfqgaikrhgqsrgpmshgshfhrapgsvgmasdasrvfkgqkmpgrmggntvtv
    qnlevvqvdtenkvilvkgnvpgpkkglveirtsikkgnk
    

    Sequence, based on observed residues (ATOM records):
    >6sj6E (E:)
    tkgilgrkigmtqvfgengelipvtvveakenvvlqkktvevdgynaiqvgfedkkaykk
    daksnkyankpaeghakkadaapkrfirefrnvdvdayevgqevsvdtfvagdvidvtgv
    skgkgfqgaikrhgqsrgpmshgshfhrapgsvgmasdasrvfkgqkmpgrmggntvtvq
    nlevvqvdtenkvilvkgnvpgpkkglveirtsikk
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6sj6F (F:)
    manydvlkldgtksgsielsdavfgiepnnsvlfeainlqraslrqgthavknrsavsgg
    grkpwkqkgtgrarqgtirapqwrgggivfgptprsyaykmpkkmrrlalrsalsfkaqe
    ngltvvdafnfeapktkefknvlstleqpkkvlvvtenedvnvelsarnipgvqvttaqg
    lnvlditnadslviteaaakkveevlg
    

    Sequence, based on observed residues (ATOM records):
    >6sj6F (F:)
    nydvlkldgtksgsielsdavfgiepnnsvlfeainlqraslrqgthavknrsavsgggr
    kpwkqkgtgrarqgtirapqwrgggivfgptprsyaykmpkkmrrlalrsalsfkaqeng
    ltvvdafnfeapktkefknvlstleqpkkvlvvtenedvnvelsarnipgvqvttaqgln
    vlditnadslviteaaakkveev
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6sj6M (M:)
    mrqtfmanesnierkwyvidaegqtlgrlssevasilrgknkvtytphvdtgdyvivina
    skieftgnketdkvyyrhsnhpggiksitagelrrtnperliensikgmlpstrlgekqg
    kklfvyggaehphaaqqpenyelrg
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6sj6N (N:)
    miqqetrlkvadnsgarevltikvlggsgrktanigdvivctvknatpggvvkkgdvvka
    vivrtksgvrrndgsyikfdenacviirddkgprgtrifgpvarelregnfmkivslape
    vl
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6sj6O (O:)
    mklhelkpaegsrkernrvgrgvatgngktsgrghkgqkarsgggvrpgfeggqlplfrr
    lpkrgftninrkeyaivnldqlnkfedgtevtpallvesgvvkneksgikilgngsldkk
    ltvkahkfsasaaeaidakggahevi
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6sj6P (P:)
    mllpkrvkyrrqhrpkttgrskggnyvtfgefglqatttswitsrqiesariamtrymkr
    ggkvwikifphtpytkkplevrmgagkgavegwiavvkpgrilfevagvseevarealrl
    ashklpvktkfvkreelggetnes
    

    Sequence, based on observed residues (ATOM records):
    >6sj6P (P:)
    mllpkrvkyrrqhrpkttgrskggnyvtfgefglqatttswitsrqiesariamtrymkr
    ggkvwikifphtpytkkplevrmgagkgavegwiavvkpgrilfevagvseevarealrl
    ashklpvktkfvkreel
    

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6sj6Q (Q:)
    mgyrklgrtsdqrkamlrdlatsliiseriettearakevrsvveklitlgkkgdlasrr
    naaktlrnveilnedettqtalqklfgeiaeryterqggytrilkqgprrgdgaesviie
    lv
    

    Sequence, based on observed residues (ATOM records):
    >6sj6Q (Q:)
    gyrklgrtsdqrkamlrdlatsliiseriettearakevrsvveklitlgkkgdlasrrn
    aaktlrnveilnedettqtalqklfgeiaeryterqggytrilkqgprrgdgaesviiel
    v
    

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6sj6R (R:)
    miskidknkvrlkrharvrtnlsgtaekprlnvyrsnkhiyaqiiddnkgvtlaqasskd
    sdiattatkvelatkvgeaiakkaadkgikeivfdrggylyhgrvkalaeaaresglef
    

    Sequence, based on observed residues (ATOM records):
    >6sj6R (R:)
    nkvrlkrharvrtnlsgtaekprlnvyrsnkhiyaqiiddnkgvtlaqasskdsdiatta
    tkvelatkvgeaiakkaadkgikeivfdrggylyhgrvkalaeaaresglef
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6sj6S (S:)
    mtnhklieavtksqlrtdlpsfrpgdtlrvhvriiegtreriqvfegvvikrrgggvset
    ftvrkissgvgvertfplhtpkiekievkrrgkvrraklyylrslrgkaariqeir
    

    Sequence, based on observed residues (ATOM records):
    >6sj6S (S:)
    mtnhklieavtksqlrtdlpsfrpgdtlrvhvriiegtreriqvfegvvikrrgggvset
    ftvrkissgvgvertfplhtpkiekievkrrgkvrraklyylr
    

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6sj6T (T:)
    mprvkggtvtrarrkktiklakgyfgskhtlykvakqqvmksgqyafrdrrqrkrdfrkl
    witrinaaarqhemsysrlmnglkkagidinrkmlseiaisdekafaqlvtkakdalk
    

    Sequence, based on observed residues (ATOM records):
    >6sj6T (T:)
    prvkggtvtrarrkktiklakgyfgskhtlykvakqqvmksgqyafrdrrqrkrdfrklw
    itrinaaarqhemsysrlmnglkkagidinrkmlseiaisdekafaqlvtkakdal
    

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6sj6U (U:)
    mfaiietggkqikveegqeifvekldvnegdtftfdkvlfvggdsvkvgaptvegatvta
    tvnkqgrgkkitvftykrrknskrkkghrqpytkltidkina
    

    Sequence, based on observed residues (ATOM records):
    >6sj6U (U:)
    faiietggkqikveegqeifvekldvnegdtftfdkvlfvggdsvkvgaptvegatvtat
    vnkqgrgkkitvftykrrknskrkkghrqpytkltidkina
    

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6sj6V (V:)
    meakavartiriaprkvrlvldlirgknaaeaiailkltnkasspviekvlmsalanaeh
    nydmntdelvvkeayanegptlkrfrpraqgrasainkrtshitivvsdgkeeakea
    

    Sequence, based on observed residues (ATOM records):
    >6sj6V (V:)
    meakavartiriaprkvrlvldlirgknaaeaiailkltnkasspviekvlmsalanaeh
    nydmntdelvvkeayanegptlkrfrpraqgrasainkrtshitivvsdg
    

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6sj6W (W:)
    meardilkrpviteksseamaedkytfdvdtrvnktqvkmaveeifnvkvasvnimnykp
    kkkrmgryqgytnkrrkaivtlkegsidlfn
    

    Sequence, based on observed residues (ATOM records):
    >6sj6W (W:)
    eardilkrpviteksseamaedkytfdvdtrvnktqvkmaveeifnvkvasvnimnykpk
    kkrmgryqgytnkrrkaivtlkegsidlf
    

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6sj6X (X:)
    mhikkgdnvkviagkdkgkegkviatlpkkdrvvvegvnimkkhqkptqlnpeggilete
    aaihvsnvqlldpktneptrvgykfvdgkkvriakksgeeiksnn
    

    Sequence, based on observed residues (ATOM records):
    >6sj6X (X:)
    ikkgdnvkviagkdkgkegkviatlpkkdrvvvegvnimkkhqknpeggileteaaihvs
    nvqlldpktneptrvgykfvdgkkvriakksgeeik
    

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6sj6Y (Y:)
    maslksiirqgkqtrsdlkqlrksgkvpavvygygtknvsvkvdevefikvirevgrngv
    ielgvgsktikvmvadyqfdplknqithidflainmseertvevpvqlvgeavgakeggv
    veqplfnlevtatpdnipeaievditelnindsltvadvkvtgdfkiendsaesvvtvva
    pteepteeeieamegeqqteepevvgeskedeektee
    

    Sequence, based on observed residues (ATOM records):
    >6sj6Y (Y:)
    gkqtrsdlkqlrksgkvpvdevefikvirekvmvadyqfdplknqithidflainm
    

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6sj6Z (Z:)
    mlklnlqffaskkgvsstkngrdseskrlgakradgqfvtggsilyrqrgtkiypgenvg
    rggddtlfakidgvvkferkgrdkkqvsvyavae
    

    Sequence, based on observed residues (ATOM records):
    >6sj6Z (Z:)
    sstkngrdseskrlgakradgqfvtggsilyrqrgtkiypgenvgrggddtlfakidgvv
    kferkgrdkkqvsvyava