PDB entry 6sgz

View 6sgz on RCSB PDB site
Description: structure of protomer 2 of the esx-3 core complex
Deposited on 2019-08-05, released 2019-10-09
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'D':
    Compound: ESX-3 secretion system protein EccE3
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: eccE3, MSMEG_0626, MSMEI_0609
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ESX-3 secretion system protein EccD3
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: eccD3, snm, MSMEG_0623, MSMEI_0607
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ESX-3 secretion system protein EccD3
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: eccD3, snm, MSMEG_0623, MSMEI_0607
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: ESX-3 secretion system ATPase EccB3
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: eccB3, MSMEG_0616, MSMEI_0600
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ESX-3 secretion system protein EccC3
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: eccC3, MSMEG_0617, MSMEI_0601
    Database cross-references and differences (RAF-indexed):
    • PDB 6SGZ (0-342)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6sgzD (D:)
tarialaslfvvaavlaqpwqtttqrwvlgvsiaavivllawwkgmflttrigralamvr
rnraedtvetdahratvvlrvdpaapaqlpvvvgyldrygitcdkvrithrdaggtrrsw
isltvdavdnlaalqarsariplqdttevvgrrladhlreqgwtvtvvegvdtplpvsgk
etwrgvaddagvvaayrvkvddrldevlaeighlpaeetwtaleftgspaeplltvcaav
rtsdrpaakaplagltpargrhrpalaalnplsterldgtavplpa

    Sequence, based on observed residues (ATOM records):
    >6sgzD (D:)
tarialaslfvvaavlaqpwqtttqrwvlgvsiaavivllmflttrigralamvrrnrda
hratvvlrvdpaapaqlpvvvgyldrygitcdkvrithrdaggtrrswisltvdavdnla
alqarsariplqdttevvgrrladhlreqgwtvtvvegvdtplpvvaayrvkvdevlaei
paeetwtaleftgspaeplltvcaavrplagltpargrpalaalnplsterldgtavplp
a

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6sgzE (E:)
vmpivrvavlaagddggrltemalpselplreilpavqrivqparendgaadpaaapnpv
rlslapiggapfsldatldtvgvvdgdllalqavpsgppaprivediadaavifsearrr
qwgpthiargaalaliglilvgtglsvahrvitgdllgqfivsgialatviaalavrnrs
avlatslavtalvpvaaafalgvpgdfgapnvllaaagvaawslismagspddrgiavft
atavtgvgvllvagaaslwvissdvigcalvllglivtvqaaqlsamwarfplpvipapg
dptpaarplsvladlprrvrvsqahqtgviaagvllgvagsvalvssanaspwawyivva
aaagaalrarvwdsaackawllghsyllavallvafvigdryqaalwalaalavlvlvwi
vaalnpkiaspdtyslpmrrmvgflatgldaslipvmallvglfslv

    Sequence, based on observed residues (ATOM records):
    >6sgzE (E:)
vmpivrvavlaagddggrltemalpselplreilpavqrivqpvrlslapiggapfslda
tldtvgvvdgdllalqavpsgppaprivediadaavifsearrrqwgpthiargaalali
glilvgtglsvahrvitgdllgqfivsgialatviaalavrnrsavlatslavtalvpva
aafalgvpgdfgapnvllaaagvaawslismagspddrgiavftatavtgvgvllvagaa
slwvissdvigcalvllglivtvqaaqlsamwarfplpsvladlprrvrvsqahqtgvia
agvllgvagsvalvssanaspwawyivvaaaagaalrarvwdsaackawllghsyllava
llvafvigdryqaalwalaalavlvlvwivaalnpkiaspdtyslpmrrmvgflatglda
slipvmallvglfsl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6sgzH (H:)
vmpivrvavlaagddggrltemalpselplreilpavqrivqparendgaadpaaapnpv
rlslapiggapfsldatldtvgvvdgdllalqavpsgppaprivediadaavifsearrr
qwgpthiargaalaliglilvgtglsvahrvitgdllgqfivsgialatviaalavrnrs
avlatslavtalvpvaaafalgvpgdfgapnvllaaagvaawslismagspddrgiavft
atavtgvgvllvagaaslwvissdvigcalvllglivtvqaaqlsamwarfplpvipapg
dptpaarplsvladlprrvrvsqahqtgviaagvllgvagsvalvssanaspwawyivva
aaagaalrarvwdsaackawllghsyllavallvafvigdryqaalwalaalavlvlvwi
vaalnpkiaspdtyslpmrrmvgflatgldaslipvmallvglfslv

    Sequence, based on observed residues (ATOM records):
    >6sgzH (H:)
pivrvavlaggrltemalpselplreilpavqrivqvrlslapiggapfsldatldtvgv
vdgdllalqavpsgppaprivediadaavifsearrrqwgpthiargaalaliglilvgt
glsvahrvitgdllgqfivsgialatviaalavrnrsavlatslavtalvpvaaafalgv
pgdapnvllaaagvaawslismagspddrgiavftatavtgvgvllvagaaslwvissdv
igcalvllglivtvqaaqlsamwarfplpvipapgdptpaarplsvladlprrvrvsqah
qtgviaagvllgvagsvalvssanaspwawyivvaaaagaalrarvwdsaackawllghs
yllavallvafvigdryqaalwalaalavlvlvwivaalnpkiaspdtyslpmrrmvgfl
atgldaslipvmallvglfslv

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6sgzI (I:)
vtrhqvsgwrfvmrriasgvalhdtrmlvdplrtqsravltgalilvtglvgcfifslf

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6sgzJ (J:)
msrlifehqrrltppttrkgtitiepppqlpmrteevdaeradylrylsvvrdnvrahaa
eqraalewshpepevlatipgtrrqwerdprdrdflvlragrhdvpldaalkvkdtadei
dlepvahsalrglldvqrtvrdaptgldvaklaritvigeadearaairawiaqavtwhd
ptmlgvalaapdlesgdwswlkwlphvdvpneadgvgparylttstaelrerlapaladr
plfpaesgaalkhllvvlddpdadpddiarkpgltgvtvihrttelpnreqypdperpil
rvadgrierwqvggwqpcvdvadamsaaeaahiarrlsrwdsn

    Sequence, based on observed residues (ATOM records):
    >6sgzJ (J:)
msrlifehqrrltppttrkgtitiepppqlpmrteevdaeradylrylsvvrdnvrahaa
eqraalewshpepevlatipgtrrqwerdprdrdflvlragrhdvpldaalkvkdtadei
dlepvahsalrglldvqrtvrdaptgldvaklaritvigeadearaairawiaqavtwhd
ptmlgvalaapdlesgdwswlkwlphvdvpneadgvgparylttstaelrerlapaladr
lkhllvvlddpdadpddiarltgvtvihrttelpnreqypdperpilrvadgrierwqvw
qpcvdvadamsaaeaahiarrlsrwdsn