PDB entry 6sei

View 6sei on RCSB PDB site
Description: recognition and processing of branched dna substrates by slx1-slx4 nuclease
Deposited on 2019-07-30, released 2019-09-25
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Structure-specific endonuclease subunit SLX1
    Species: Thielavia terrestris [TaxId:35720]
    Gene: SLX1, THITE_2107775
    Database cross-references and differences (RAF-indexed):
    • Uniprot G2QV68
      • engineered mutation (78)
  • Chain 'B':
    Compound: structure-specific endonuclease subunit slx4
    Species: Thielavia terrestris [TaxId:35720]
    Gene: SLX4, TT172_LOCUS87
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Structure-specific endonuclease subunit SLX1
    Species: Thielavia terrestris [TaxId:35720]
    Gene: SLX1, THITE_2107775
    Database cross-references and differences (RAF-indexed):
    • Uniprot G2QV68
      • engineered mutation (78)
  • Chain 'D':
    Compound: structure-specific endonuclease subunit slx4
    Species: Thielavia terrestris [TaxId:35720]
    Gene: SLX4, TT172_LOCUS87
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (32-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ZN, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6seiA (A:)
mtvqckpipalytvyvlrstvrhaslyigstpnpprrlkqhnglvpggaartsrsslrpw
emvalvsgfpsmvaalkfqwaltnphlsvhipsasrltvatqtkangrpqrpprslasvv
anlhlllrvpsfarwplrvhffrrdvfaawekwcaaaserlrpslavvtdfeggseglag
avvggeegrergegapcwgihalpldyepikdyvakgqeifeferqgacvvcreemasgd
glqalctnqgcdgvghlscwsrhflkgaeadsilpvqgqcpkcggemewgnmmkeltlrt
rgqkevekllkrkrrratkktana

    Sequence, based on observed residues (ATOM records):
    >6seiA (A:)
qckpipalytvyvlrstvrhaslyigstpnpprrlkqhnglvpggaartsrsslrpwemv
alvsgfpsmvaalkfqwaltnphlsvhipsasrrpqrpprslasvvanlhlllrvpsfar
wplrvhffrrdvfaawekwcaaaserlrpslavvtdfeggspcwgihalpldyepikdyv
akgqeifeferqgacvvcreemasgdglqalctnqgcdgvghlscwsrhflkeadsilpv
qgqcpkcggemewgnmmkeltlrtrgqkevekllkr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6seiB (B:)
medtetslvasptdqqvslfryitqavvtaprakdpanpswhekmlmydpiiledltawl
nsgqldrvgydgevapgdvkkwcesksvcclwrvslngkerkrf

    Sequence, based on observed residues (ATOM records):
    >6seiB (B:)
asptdqqvslfryitqavvtaprakdpanpswhekmlmydpiiledltawlnsgqldrvg
ydgevapgdvkkwcesksvcclwr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6seiC (C:)
mtvqckpipalytvyvlrstvrhaslyigstpnpprrlkqhnglvpggaartsrsslrpw
emvalvsgfpsmvaalkfqwaltnphlsvhipsasrltvatqtkangrpqrpprslasvv
anlhlllrvpsfarwplrvhffrrdvfaawekwcaaaserlrpslavvtdfeggseglag
avvggeegrergegapcwgihalpldyepikdyvakgqeifeferqgacvvcreemasgd
glqalctnqgcdgvghlscwsrhflkgaeadsilpvqgqcpkcggemewgnmmkeltlrt
rgqkevekllkrkrrratkktana

    Sequence, based on observed residues (ATOM records):
    >6seiC (C:)
qckpipalytvyvlrstvrhaslyigstpnpprrlkqhnglvpggaartsrsslrpwemv
alvsgfpsmvaalkfqwaltnphlsvhipsasrpqrpprslasvvanlhlllrvpsfarw
plrvhffrrdvfaawekwcaaaserlrpslavvtdfeggcwgihalpldyepikdyvakg
qeifeferqgacvvcreemasgdglqalctnqgcdgvghlscwsrhflkdsilpvqgqcp
kcggemewgnmmkeltlrtrgqkevekllk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6seiD (D:)
medtetslvasptdqqvslfryitqavvtaprakdpanpswhekmlmydpiiledltawl
nsgqldrvgydgevapgdvkkwcesksvcclwrvslngkerkrf

    Sequence, based on observed residues (ATOM records):
    >6seiD (D:)
asptdqqvslfryitqavvtaprakdpanpswhekmlmydpiiledltawlnsgqldrvg
ydgevapgdvkkwcesksvcclwr

  • Chain 'E':
    No sequence available.