PDB entry 6san

View 6san on RCSB PDB site
Description: SALSA / DMBT1 / GP340 SRCR domain 8 soaked in calcium and magnesium
Class: immune system
Keywords: Scavenger receptor cysteine-rich, pattern recognition, mucosal immunology, anti-microbial molecule, complement, innate immunity, inflammation, salivary agglutinin, salivary scavenger and agglutinin, metal binding, calcium dependency, IMMUNE SYSTEM
Deposited on 2019-07-17, released 2020-03-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: XRAY
Resolution: 1.36 Å
R-factor: N/A
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Deleted in malignant brain tumors 1 protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DMBT1, GP340
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGM3 (18-126)
      • expression tag (127-129)
    Domains in SCOPe 2.08: d6sana1, d6sana2
  • Chain 'B':
    Compound: Deleted in malignant brain tumors 1 protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DMBT1, GP340
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGM3 (18-126)
      • expression tag (127-129)
    Domains in SCOPe 2.08: d6sanb1, d6sanb2
  • Heterogens: MG, CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6sanA (A:)
mklcillavvafvglslggsesslalrlvnggdrcqgrvevlyqgswgtvcddswdtnda
nvvcrqlgcgwamsapgnarfgqgsgpivlddvrcsghesylwscphngwlshncghsed
agvicsavnidhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6sanA (A:)
gsesslalrlvnggdrcqgrvevlyqgswgtvcddswdtndanvvcrqlgcgwamsapgn
arfgqgsgpivlddvrcsghesylwscphngwlshncghsedagvicsavni

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6sanB (B:)
mklcillavvafvglslggsesslalrlvnggdrcqgrvevlyqgswgtvcddswdtnda
nvvcrqlgcgwamsapgnarfgqgsgpivlddvrcsghesylwscphngwlshncghsed
agvicsavnidhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6sanB (B:)
gsesslalrlvnggdrcqgrvevlyqgswgtvcddswdtndanvvcrqlgcgwamsapgn
arfgqgsgpivlddvrcsghesylwscphngwlshncghsedagvicsavni