PDB entry 6sa0

View 6sa0 on RCSB PDB site
Description: ternary complex of prim-polc from mycobacterium smegmatis with 2nt gapped dna and upnhpp
Deposited on 2019-07-15, released 2020-11-18
The last revision was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase LigD, polymerase domain
    Species: Mycolicibacterium smegmatis MC2 155 [TaxId:246196]
    Gene: ligD
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(p*gp*cp*gp*ap*gp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA (5'-d(*cp*gp*cp*tp*cp*gp*cp*ap*ap*cp*gp*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA polymerase LigD, polymerase domain
    Species: Mycolicibacterium smegmatis MC2 155 [TaxId:246196]
    Gene: ligD
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(p*gp*cp*gp*ap*gp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*cp*gp*cp*tp*cp*gp*cp*ap*ap*cp*gp*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(p*tp*gp*cp*gp)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA (5'-d(p*tp*gp*cp*gp)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: 2KH, MN, CAC, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6sa0A (A:)
mmasaateldvdgvkvrftnpdkvyfpklgkngtkgklveyylsvasgpmlallrdrpvh
lqrfpdgiegeeiyqkrvpqkhpdyletcvvtfpsgrtadalkithpssiiwaaqmgtvt
lhpwqvrcpdtehpdelrvdldpqpgtgfkeartvacdvlkplldelglvgypktsggrg
vhvflrikpqwdfievrragialareverrapdavttswwkeergerlfidynqnardrt
fasaysvrktpiatvsmplswdelrnadpddytmntvpdllagrddpwadidsvqqslgp
lldlvaadeerglgdlpyppnypkmpgepprvqpskkvaehwdeqgnrkq

    Sequence, based on observed residues (ATOM records):
    >6sa0A (A:)
saateldvdgvkvrftnpdkvyfpklgkngtkgklveyylsvasgpmlallrdrpvhlqr
fpdgiegeeiyqkrvpqkhpdyletcvvtfpsgrtadalkithpssiiwaaqmgtvtlhp
wqvrcpdtehpdelrvdldpqpgtgfkeartvacdvlkplldelglvgypktsggrgvhv
flrikpqwdfievrragialareverrapdavttswwkeergerlfidynqnardrtfas
aysvrktpiatvsmplswdelrnadpddytmntvpdllagrddpwadidsvqqslgplld
lvaadeerglgdlpyppnypkmpgepprvqpsk

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6sa0D (D:)
mmasaateldvdgvkvrftnpdkvyfpklgkngtkgklveyylsvasgpmlallrdrpvh
lqrfpdgiegeeiyqkrvpqkhpdyletcvvtfpsgrtadalkithpssiiwaaqmgtvt
lhpwqvrcpdtehpdelrvdldpqpgtgfkeartvacdvlkplldelglvgypktsggrg
vhvflrikpqwdfievrragialareverrapdavttswwkeergerlfidynqnardrt
fasaysvrktpiatvsmplswdelrnadpddytmntvpdllagrddpwadidsvqqslgp
lldlvaadeerglgdlpyppnypkmpgepprvqpskkvaehwdeqgnrkq

    Sequence, based on observed residues (ATOM records):
    >6sa0D (D:)
saateldvdgvkvrftnpdkvyfpklgkngtkgklveyylsvasgpmlallrdrpvhlqr
fpdgiegeeiyqkrvpqkhpdyletcvvtfpsgrtadalkithpssiiwaaqmgtvtlhp
wqvrcpdtehpdelrvdldpqpgtgfkeartvacdvlkplldelglvgypktsggrgvhv
flrikpqwdfievrragialareverrapdavttswwkeergerlfidynqnardrtfas
aysvrktpiatvsmplswdelrnadpddytmntvpdllagrddpwadidsvqqslgplld
lvaadeerglgdlpyppnypkmpgepprvqpsk

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.