PDB entry 6s8j

View 6s8j on RCSB PDB site
Description: Structure of ZEBOV GP in complex with 5T0180 antibody
Class: viral protein
Keywords: Ebola, glycoprotein, antibodies, VIRAL PROTEIN
Deposited on 2019-07-10, released 2020-02-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: EM
Resolution: 2.91 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope Glycoprotein 1
    Species: Ebola virus [TaxId:1570291]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
  • Chain 'B':
    Compound: Envelope glycoprotein
    Species: Ebola virus [TaxId:1570291]
    Gene: GP, DF49_53415gpGP, DF49_53416gpGP, DF49_53417gpGP, DF49_53418gpGP, DF49_53419gpGP, DF49_53420gpGP, DF49_53421gpGP, DF49_53422gpGP, DF49_53423gpGP, DF49_53424gpGP, DF49_53425gpGP, DF49_53426gpGP
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Envelope Glycoprotein 1
    Species: Ebola virus [TaxId:1570291]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
  • Chain 'D':
    Compound: Envelope glycoprotein
    Species: Ebola virus [TaxId:1570291]
    Gene: GP, DF49_53415gpGP, DF49_53416gpGP, DF49_53417gpGP, DF49_53418gpGP, DF49_53419gpGP, DF49_53420gpGP, DF49_53421gpGP, DF49_53422gpGP, DF49_53423gpGP, DF49_53424gpGP, DF49_53425gpGP, DF49_53426gpGP
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Envelope Glycoprotein 1
    Species: Ebola virus [TaxId:1570291]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
  • Chain 'F':
    Compound: Envelope glycoprotein
    Species: Ebola virus [TaxId:1570291]
    Gene: GP, DF49_53415gpGP, DF49_53416gpGP, DF49_53417gpGP, DF49_53418gpGP, DF49_53419gpGP, DF49_53420gpGP, DF49_53421gpGP, DF49_53422gpGP, DF49_53423gpGP, DF49_53424gpGP, DF49_53425gpGP, DF49_53426gpGP
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
    Domains in SCOPe 2.08: d6s8jh_
  • Chain 'L':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
    Domains in SCOPe 2.08: d6s8jl1
  • Chain 'O':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
    Domains in SCOPe 2.08: d6s8jo1
  • Chain 'P':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
    Domains in SCOPe 2.08: d6s8jp_
  • Chain 'U':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
    Domains in SCOPe 2.08: d6s8ju1
  • Chain 'Y':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S8J
    Domains in SCOPe 2.08: d6s8jy_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6s8jH (H:)
evqlvesggglvkpggslrlscaasgfsfgnawmnwvrqapgkglewvgriksksdggtt
dyaapvkdrfiisrddskktlylqmnslrredtavyycvrgpfycdtcgpndywgqgtlv
tvssgstkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >6s8jH (H:)
vqlvesggglvkpggslrlscaasgfsfgnawmnwvrqapgkglewvgriksksdggttd
yaapvkdrfiisrddskktlylqmnslrredtavyycvrgpfycdtcgpndywgqgtlvt
vs

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6s8jL (L:)
qsvltqppsvsgapgqrvtisctgsssnigagydvqwyqqlpgtapkvliygnnnrpsgv
pdrfsgsksgssaslaitglqaedeadyycqtydsrlrdqwvfgggtkltvlgqpkaaps
vtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaa
ssylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6s8jL (L:)
svltqppsvsgapgqrvtisctgsssnigagydvqwyqqlpgtapkvliygnnnrpsgvp
drfsgsksgssaslaitglqaedeadyycqtydsrlrdqwvfgggtkltv

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >6s8jO (O:)
qsvltqppsvsgapgqrvtisctgsssnigagydvqwyqqlpgtapkvliygnnnrpsgv
pdrfsgsksgssaslaitglqaedeadyycqtydsrlrdqwvfgggtkltvlgqpkaaps
vtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaa
ssylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6s8jO (O:)
svltqppsvsgapgqrvtisctgsssnigagydvqwyqqlpgtapkvliygnnnrpsgvp
drfsgsksgssaslaitglqaedeadyycqtydsrlrdqwvfgggtkltv

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >6s8jP (P:)
evqlvesggglvkpggslrlscaasgfsfgnawmnwvrqapgkglewvgriksksdggtt
dyaapvkdrfiisrddskktlylqmnslrredtavyycvrgpfycdtcgpndywgqgtlv
tvssgstkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >6s8jP (P:)
vqlvesggglvkpggslrlscaasgfsfgnawmnwvrqapgkglewvgriksksdggttd
yaapvkdrfiisrddskktlylqmnslrredtavyycvrgpfycdtcgpndywgqgtlvt
vs

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >6s8jU (U:)
qsvltqppsvsgapgqrvtisctgsssnigagydvqwyqqlpgtapkvliygnnnrpsgv
pdrfsgsksgssaslaitglqaedeadyycqtydsrlrdqwvfgggtkltvlgqpkaaps
vtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaa
ssylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6s8jU (U:)
svltqppsvsgapgqrvtisctgsssnigagydvqwyqqlpgtapkvliygnnnrpsgvp
drfsgsksgssaslaitglqaedeadyycqtydsrlrdqwvfgggtkltv

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >6s8jY (Y:)
evqlvesggglvkpggslrlscaasgfsfgnawmnwvrqapgkglewvgriksksdggtt
dyaapvkdrfiisrddskktlylqmnslrredtavyycvrgpfycdtcgpndywgqgtlv
tvssgstkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >6s8jY (Y:)
vqlvesggglvkpggslrlscaasgfsfgnawmnwvrqapgkglewvgriksksdggttd
yaapvkdrfiisrddskktlylqmnslrredtavyycvrgpfycdtcgpndywgqgtlvt
vs