PDB entry 6s84

View 6s84 on RCSB PDB site
Description: TsaBDE complex from Thermotoga maritima
Class: RNA binding protein
Keywords: modification, t6A, tRNA maturation, RNA BINDING PROTEIN
Deposited on 2019-07-08, released 2019-07-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: tRNA N6-adenosine threonylcarbamoyltransferase
  Species: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) [TaxId:243274]
  Gene: tsaD, gcp, TM_0145
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9WXZ2 (0-326)
• Chain 'B':
  Compound: ATPase YjeE, predicted to have essential role in cell wall biosynthesis
  Species: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) [TaxId:243274]
  Gene: Tmari_1641
  Database cross-references and differences (RAF-indexed):
  • Uniprot R4NRX5
• Chain 'C':
  Compound: tRNA threonylcarbamoyladenosine biosynthesis protein tsab
  Species: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) [TaxId:243274]
  Gene: tsaB, TM_0874, Tmari_0876
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9WZX7 (0-End)
  Domains in SCOPe 2.08: d6s84c1, d6s84c2
• Chain 'D':
  Compound: tRNA N6-adenosine threonylcarbamoyltransferase
  Species: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) [TaxId:243274]
  Gene: tsaD, gcp, TM_0145
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9WXZ2 (0-326)
• Chain 'E':
  Compound: ATPase YjeE, predicted to have essential role in cell wall biosynthesis
  Species: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) [TaxId:243274]
  Gene: Tmari_1641
  Database cross-references and differences (RAF-indexed):
  • Uniprot R4NRX5
• Chain 'F':
  Compound: tRNA threonylcarbamoyladenosine biosynthesis protein tsab
  Species: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) [TaxId:243274]
  Gene: tsaB, TM_0874, Tmari_0876
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9WZX7 (0-End)
  Domains in SCOPe 2.08: d6s84f1, d6s84f2
• Heterogens: APC, MG, LEU, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence, based on SEQRES records: (download)
  

  >6s84C (C:)
  mnvlaldtsqririglrkgedlfeisytgekkhaeilpvvvkklldeldlkvkdldvvgv
  gigpggltglrvgiatvvglvspydipvaplnsfemtakscpadgvvlvarrarkgyhyc
  avylkdkglnplkepsvvsdeeleeitkefspkivlkddllispavlveeserlfrekkt
  ihyyeieplylqksiaelnwekkkrg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6s84C (C:)
  mnvlaldtsqririglrkgedlfeisytgekkhaeilpvvvkklldeldlkvkdldvvgv
  gigpggltglrvgiatvvglvspydipvaplnsfemtakscpadgvvlvarrarkgyhyc
  avylkdkglnplkepsvvsdeeleeitkefspkivlkddllispavlveeserlfrekkt
  ihyyeieplylqksiaelnwekkkr
  

  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence, based on SEQRES records: (download)
  

  >6s84F (F:)
  mnvlaldtsqririglrkgedlfeisytgekkhaeilpvvvkklldeldlkvkdldvvgv
  gigpggltglrvgiatvvglvspydipvaplnsfemtakscpadgvvlvarrarkgyhyc
  avylkdkglnplkepsvvsdeeleeitkefspkivlkddllispavlveeserlfrekkt
  ihyyeieplylqksiaelnwekkkrg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6s84F (F:)
  mnvlaldtsqririglrkgedlfeisytgekkhaeilpvvvkklldeldlkvkdldvvgv
  gigpggltglrvgiatvvglvspydipvaplnsfemtakscpadgvvlvarrarkgyhyc
  avylkdkglnplkepsvvsdeeleeitkefspkivlkddllispavlveeserlfrekkt
  ihyyeieplylqksiaelnwe