PDB entry 6s7j

View 6s7j on RCSB PDB site
Description: Native crystal structure of ergothioneine degrading enzyme Ergothionase from Treponema denticola
Class: lyase
Keywords: ergothioneine degrading enzyme, TdETL, trimethlyammonium lyase, LYASE, ergothioneine
Deposited on 2019-07-05, released 2019-07-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-14, with a file datestamp of 2019-08-09.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7ja_
  • Chain 'B':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7jb_
  • Chain 'C':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7jc1
  • Chain 'D':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7jd_
  • Chain 'E':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7je_
  • Chain 'F':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7jf_
  • Chain 'G':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7jg_
  • Chain 'H':
    Compound: Uncharacterized protein
    Species: Treponema denticola SP33 [TaxId:999437]
    Gene: HMPREF9733_00339
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6s7jh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6s7jA (A:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6s7jB (B:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6s7jC (C:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

    Sequence, based on observed residues (ATOM records): (download) 
    >6s7jC (C:)
dliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvgw
nkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellhh
yrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglkp
aklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvna
vrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreqll
ttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladpsf
tklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlplac
ykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisrd
ietmyefikskkllni

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6s7jD (D:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6s7jE (E:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6s7jF (F:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

    Sequence, based on observed residues (ATOM records): (download) 
    >6s7jF (F:)
aliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvgw
nkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellhh
yrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglkp
aklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvna
vrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreqll
ttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladpsf
tklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlplac
ykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisrd
ietmyefikskkllni

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6s7jG (G:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6s7jH (H:)
daliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvg
wnkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellh
hyrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglk
paklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvn
avrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreql
lttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladps
ftklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlpla
cykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisr
dietmyefikskkllni

    Sequence, based on observed residues (ATOM records): (download) 
    >6s7jH (H:)
aliltgkplsledvysvaynnrqvkisddaeervkkarqilfdmaaegkpvyglnrgvgw
nkdkefdedffatynrnllnshclgvkpyhpdeqvrailllrlnkaltghtgisaellhh
yrdflnygihpripmrssigegdittlshiglafigeedvsfngeimnskkamekaglkp
aklgpkdglsivscnaqgeamtaivlkeiedlvymsnlifclsleglngvvqslredvna
vrgikgqikaaemcreflkgsflydpdperalqdplsfrcahsvngtmydamdyvreqll
ttmnttddnpciiidehssfvsanfeitslaigvemlatalshlsktscyrmikladpsf
tklnrfltpqdvktiafgtiqktftmldtqnrglanpssmdfyslagtiedhasnlplac
ykifqmldniryiigieamhaaqaidlrgnkklgegtkkayslirevlpfynedrnisrd
ietmyefikskkllni