PDB entry 6s3s

View 6s3s on RCSB PDB site
Description: structure of the flipqr complex from the flagellar type 3 secretion system of vibrio mimicus.
Deposited on 2019-06-25, released 2020-03-25
The last revision was dated 2020-03-25, with a file datestamp of 2020-03-20.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Flagellar biosynthetic protein FliP
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliP, AL544_009685
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Flagellar biosynthetic protein FliP
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliP, AL544_009685
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Flagellar biosynthetic protein FliP
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliP, AL544_009685
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Flagellar biosynthetic protein FliP
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliP, AL544_009685
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Flagellar biosynthetic protein FliP
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliP, AL544_009685
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Flagellar biosynthetic protein FliR
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: AL544_009675
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1D8S9I5 (Start-259)
      • expression tag (260-263)
  • Chain 'G':
    Compound: Flagellar biosynthetic protein FliQ
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliQ, AL544_009680
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Flagellar biosynthetic protein FliQ
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliQ, AL544_009680
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Flagellar biosynthetic protein FliQ
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliQ, AL544_009680
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Flagellar biosynthetic protein FliQ
    Species: Vibrio mimicus CAIM 602 [TaxId:1259812]
    Gene: fliQ, AL544_009680
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6s3sA (A:)
    mkrtqrlnltswlttglltwllsgmlgfaslafaeeplntgipstaagassvtvtaleke
    qgnaktialgsssggsgipaftmttnpdgsedysinlqilalmtmlgflpamvilmtsft
    rivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqavqpylneqisarq
    afdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipafitselktafqig
    fmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnlilstlagsfal
    

    Sequence, based on observed residues (ATOM records):
    >6s3sA (A:)
    lpamvilmtsftrivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqav
    qpylneqisarqafdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipaf
    itselktafqigfmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnl
    ilstlagsfal
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6s3sB (B:)
    mkrtqrlnltswlttglltwllsgmlgfaslafaeeplntgipstaagassvtvtaleke
    qgnaktialgsssggsgipaftmttnpdgsedysinlqilalmtmlgflpamvilmtsft
    rivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqavqpylneqisarq
    afdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipafitselktafqig
    fmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnlilstlagsfal
    

    Sequence, based on observed residues (ATOM records):
    >6s3sB (B:)
    mlgflpamvilmtsftrivvvmsilrqamglqqtpsnqviigialfltffimapvfnqin
    eqavqpylneqisarqafdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavl
    ipafitselktafqigfmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvd
    gwnlilstlagsfal
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6s3sC (C:)
    mkrtqrlnltswlttglltwllsgmlgfaslafaeeplntgipstaagassvtvtaleke
    qgnaktialgsssggsgipaftmttnpdgsedysinlqilalmtmlgflpamvilmtsft
    rivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqavqpylneqisarq
    afdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipafitselktafqig
    fmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnlilstlagsfal
    

    Sequence, based on observed residues (ATOM records):
    >6s3sC (C:)
    tmlgflpamvilmtsftrivvvmsilrqamglqqtpsnqviigialfltffimapvfnqi
    neqavqpylneqisarqafdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmav
    lipafitselktafqigfmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlv
    dgwnlilstlagsfal
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6s3sD (D:)
    mkrtqrlnltswlttglltwllsgmlgfaslafaeeplntgipstaagassvtvtaleke
    qgnaktialgsssggsgipaftmttnpdgsedysinlqilalmtmlgflpamvilmtsft
    rivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqavqpylneqisarq
    afdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipafitselktafqig
    fmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnlilstlagsfal
    

    Sequence, based on observed residues (ATOM records):
    >6s3sD (D:)
    tmlgflpamvilmtsftrivvvmsilrqamglqqtpsnqviigialfltffimapvfnqi
    neqavqpylneqisarqafdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmav
    lipafitselktafqigfmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlv
    dgwnlilstlagsfal
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6s3sE (E:)
    mkrtqrlnltswlttglltwllsgmlgfaslafaeeplntgipstaagassvtvtaleke
    qgnaktialgsssggsgipaftmttnpdgsedysinlqilalmtmlgflpamvilmtsft
    rivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqavqpylneqisarq
    afdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipafitselktafqig
    fmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnlilstlagsfal
    

    Sequence, based on observed residues (ATOM records):
    >6s3sE (E:)
    vilmtsftrivvvmsilrqamglqqtpsnqviigialfltffimapvfnqineqavqpyl
    neqisarqafdlaqepmkafmlkqtrikdletfvemsgsqvtapeqvsmavlipafitse
    lktafqigfmlflpfliidlvvasvlmamgmmmlspmivslpfklmlfvlvdgwnlilst
    lagsfal
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6s3sF (F:)
    meypasvvldfianyfwpytriaamlmvmtvtgarfvparvrlylglaltfavmpaipav
    psdiallslqgfmitfeqivigmamgmvtqflvqifvmlgqilgmqsslgfasmvdpang
    qntpllgqmfmllatlfflssdghlkmiqlvvfsfkslpigsgslttvdyrelalwlgim
    fkaslavslsgiialltvnlsfgvmtraapqlnifslgfsfallvglllcwyilsglyth
    yeiywqeteeqicrlirlncenlyfqgqfgswshpqfekgggsgggsgggswshpqfek
    

    Sequence, based on observed residues (ATOM records):
    >6s3sF (F:)
    vldfianyfwpytriaamlmvmtvtgarfvparvrlylglaltfavmpaipavpsdiall
    slqgfmitfeqivigmamgmvtqflvqifvmlgqilgmqsslgfasmvdpangqntpllg
    qmfmllatlfflssdghlkmiqlvvfsfkslpigsgslttvdyrelalwlgimfkaslav
    slsgiialltvnlsfgvmtraapqlnifslgfsfallvglllcwyilsglythyeiywqe
    teeqicrlirlncenly
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6s3sG (G:)
    mtpeifvelfkeslwlvlimvcaiiipslliglvvaifqaatsineqtlsflprliitll
    almffghwmtqmlmdffysmierlpqvly
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6s3sH (H:)
    mtpeifvelfkeslwlvlimvcaiiipslliglvvaifqaatsineqtlsflprliitll
    almffghwmtqmlmdffysmierlpqvly
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6s3sI (I:)
    mtpeifvelfkeslwlvlimvcaiiipslliglvvaifqaatsineqtlsflprliitll
    almffghwmtqmlmdffysmierlpqvly
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6s3sJ (J:)
    mtpeifvelfkeslwlvlimvcaiiipslliglvvaifqaatsineqtlsflprliitll
    almffghwmtqmlmdffysmierlpqvly
    

    Sequence, based on observed residues (ATOM records):
    >6s3sJ (J:)
    mtpeifvelfkeslwlvlimvcaiiipslliglvvaifqlsflprliitllalmffghwm
    tqmlmdffysmierlpqvly