PDB entry 6s3d

View 6s3d on RCSB PDB site
Description: structure of d25 fab in complex with scaffold s0_2.126
Deposited on 2019-06-25, released 2020-04-22
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'B':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'C':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'D':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'E':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'F':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'H':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'L':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'M':
    Compound: s0_2.126
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'N':
    Compound: s0_2.126
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'O':
    Compound: s0_2.126
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D
  • Chain 'P':
    Compound: s0_2.126
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6S3D

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6s3dA (A:)
trqvqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtv
hyapkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgq
gtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdgtkhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6s3dA (A:)
vqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtvhya
pkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgqgtl
vtvssastkgpsvfplataalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6s3dB (B:)
trdiqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgv
psrfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgecgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dB (B:)
diqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgvps
rfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfifpp
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6s3dC (C:)
trqvqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtv
hyapkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgq
gtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdgtkhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6s3dC (C:)
vqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtvhya
pkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgqgtl
vtvssastkgpsvfpltaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6s3dD (D:)
trdiqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgv
psrfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgecgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dD (D:)
rdiqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgvp
srfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfifp
psdeqlkstasvvcllnnfypreakvqwkvdnlqsgnsqesvteqdskdstyslsstltd
yekhkvyacevthqglsspvtksfnr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6s3dE (E:)
trqvqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtv
hyapkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgq
gtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdgtkhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6s3dE (E:)
vqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtvhya
pkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgqgtl
vtvssastkgpvfplataalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6s3dF (F:)
trdiqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgv
psrfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgecgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dF (F:)
diqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgvps
rfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfifpp
deqlkstasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltad
yekhkvyacevthqglsspvtksfnr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6s3dH (H:)
trqvqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtv
hyapkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgq
gtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdgtkhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6s3dH (H:)
vqlvqsgaevkkpgssvmvscqasggplrnyiinwlrqapgqgpewmggiipvlgtvhya
pkfqgrvtitadestdtayihlislrsedtamyycatetalvvsttylphyfdnwgqgtl
vtvssastkgpsvfplataalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdk

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6s3dL (L:)
trdiqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgv
psrfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgecgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dL (L:)
diqmtqspsslsaavgdrvtitcqasqdivnylnwyqqkpgkapklliyvasnletgvps
rfsgsgsgtdfsltisslqpedvatyycqqydnlpltfgggtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6s3dM (M:)
aspcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikcg
gswlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dM (M:)
spcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikcg

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6s3dN (N:)
aspcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikcg
gswlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dN (N:)
spcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikc

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6s3dO (O:)
aspcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikcg
gswlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dO (O:)
spcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikcg

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6s3dP (P:)
aspcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikcg
gswlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6s3dP (P:)
spcdkqknyidkqllpivnkagcsrpeeveerirralkkmgdtscfdeilkglkeikc