PDB entry 6s21

View 6s21 on RCSB PDB site
Description: metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (bt33494s-sulf)
Deposited on 2019-06-19, released 2020-02-05
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endo-4-O-sulfatase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_3349
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Endo-4-O-sulfatase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_3349
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Endo-4-O-sulfatase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_3349
    Database cross-references and differences (RAF-indexed):
  • Heterogens: BDP, GCD, ASG, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6s21A (A:)
mgsshhhhhhssglvprgshmqvaeqaehpniiyvfpdqyrnqamgfwnqegfrdkvnfr
gdpvhtpnidtfaresmvltsaqsncplssphrgmlltgmypnrsgvplncnstrpissl
rddaecigdvfskagydcayfgklhadfptpndpenpgqyvetqrpvwdaytpkeqrhgf
nywysygtfdehknphywdtdgkrhdpkewsplhesgkvvsylknegnvrdtkkpffimv
gmnpphspyrslndceeqdfnlykdqpldsllirpnvdlnmkkaesvryyfasvtgvdra
fgqilealkqlgldkntvvifasdhgetmcsqrtddpknspysesmnipflvrfpgkiqp
rvddlllsapdimptvlglcglgdsipsevqgrnfaplffdekaeivrpagalyiqnldg
ekdkdglvqsyfpssrgiktarytlalyidrktkqlkksllfddvndpyqlnnlpldenk
evveqlyremgtmlkeiddpwytekilsdripy

    Sequence, based on observed residues (ATOM records):
    >6s21A (A:)
ehpniiyvfpdqyrnqamgfwnqegfrdkvnfrgdpvhtpnidtfaresmvltsaqsncp
lssphrgmlltgmypnrsgvplncnstrpisslrddaecigdvfskagydcayfgklhad
fptpndpenpgqyvetqrpvwdaytpkeqrhgfnywysygtfdehknphywdtdgkrhdp
kewsplhesgkvvsylknegnvrdtkkpffimvgmnpphspyrslndceeqdfnlykdqp
ldsllirpnvdlnmkkaesvryyfasvtgvdrafgqilealkqlgldkntvvifasdhge
tmcsqrtddpknspysesmnipflvrfpgkiqprvddlllsapdimptvlglcglgdsip
sevqgrnfaplffdekaeivrpagalyiqnldgekdkdglvqsyfpssrgiktarytlal
yidrktkqlkksllfddvndpyqlnnlpldenkevveqlyremgtmlkeiddpwytekil
sdripy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6s21B (B:)
mgsshhhhhhssglvprgshmqvaeqaehpniiyvfpdqyrnqamgfwnqegfrdkvnfr
gdpvhtpnidtfaresmvltsaqsncplssphrgmlltgmypnrsgvplncnstrpissl
rddaecigdvfskagydcayfgklhadfptpndpenpgqyvetqrpvwdaytpkeqrhgf
nywysygtfdehknphywdtdgkrhdpkewsplhesgkvvsylknegnvrdtkkpffimv
gmnpphspyrslndceeqdfnlykdqpldsllirpnvdlnmkkaesvryyfasvtgvdra
fgqilealkqlgldkntvvifasdhgetmcsqrtddpknspysesmnipflvrfpgkiqp
rvddlllsapdimptvlglcglgdsipsevqgrnfaplffdekaeivrpagalyiqnldg
ekdkdglvqsyfpssrgiktarytlalyidrktkqlkksllfddvndpyqlnnlpldenk
evveqlyremgtmlkeiddpwytekilsdripy

    Sequence, based on observed residues (ATOM records):
    >6s21B (B:)
hpniiyvfpdqyrnqamgfwnqegfrdkvnfrgdpvhtpnidtfaresmvltsaqsncpl
ssphrgmlltgmypnrsgvplncnstrpisslrddaecigdvfskagydcayfgklhadf
ptpndpenpgqyvetqrpvwdaytpkeqrhgfnywysygtfdehknphywdtdgkrhdpk
ewsplhesgkvvsylknegnvrdtkkpffimvgmnpphspyrslndceeqdfnlykdqpl
dsllirpnvdlnmkkaesvryyfasvtgvdrafgqilealkqlgldkntvvifasdhget
mcsqrtddpknspysesmnipflvrfpgkiqprvddlllsapdimptvlglcglgdsips
evqgrnfaplffdekaeivrpagalyiqnldgekdkdglvqsyfpssrgiktarytlaly
idrktkqlkksllfddvndpyqlnnlpldenkevveqlyremgtmlkeiddpwytekils
dripy

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6s21C (C:)
mgsshhhhhhssglvprgshmqvaeqaehpniiyvfpdqyrnqamgfwnqegfrdkvnfr
gdpvhtpnidtfaresmvltsaqsncplssphrgmlltgmypnrsgvplncnstrpissl
rddaecigdvfskagydcayfgklhadfptpndpenpgqyvetqrpvwdaytpkeqrhgf
nywysygtfdehknphywdtdgkrhdpkewsplhesgkvvsylknegnvrdtkkpffimv
gmnpphspyrslndceeqdfnlykdqpldsllirpnvdlnmkkaesvryyfasvtgvdra
fgqilealkqlgldkntvvifasdhgetmcsqrtddpknspysesmnipflvrfpgkiqp
rvddlllsapdimptvlglcglgdsipsevqgrnfaplffdekaeivrpagalyiqnldg
ekdkdglvqsyfpssrgiktarytlalyidrktkqlkksllfddvndpyqlnnlpldenk
evveqlyremgtmlkeiddpwytekilsdripy

    Sequence, based on observed residues (ATOM records):
    >6s21C (C:)
ehpniiyvfpdqyrnqamgfwnqegfrdkvnfrgdpvhtpnidtfaresmvltsaqsncp
lssphrgmlltgmypnrsgvplncnstrpisslrddaecigdvfskagydcayfgklhad
fptpndpenpgqyvetqrpvwdaytpkeqrhgfnywysygtfdehknphywdtdgkrhdp
kewsplhesgkvvsylknegnvrdtkkpffimvgmnpphspyrslndceeqdfnlykdqp
ldsllirpnvdlnmkkaesvryyfasvtgvdrafgqilealkqlgldkntvvifasdhge
tmcsqrtddpknspysesmnipflvrfpgkiqprvddlllsapdimptvlglcglgdsip
sevqgrnfaplffdekaeivrpagalyiqnldgekdkdglvqsyfpssrgiktarytlal
yidrktkqlkksllfddvndpyqlnnlpldenkevveqlyremgtmlkeiddpwytekil
sdripy