PDB entry 6s20

View 6s20 on RCSB PDB site
Description: metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (bt33336s-sulf)
Deposited on 2019-06-19, released 2020-02-05
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: N-acetylgalactosamine-6-O-sulfatase
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_3333
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NG6, PGE, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6s20C (C:)
    mgsshhhhhhssglvprgshmasqkvqkdngqnsqkpniiyifaddlgigdlscygatkv
    stphidrlagqgvqftnayatsatstpsrfglltgmypwrqentgiapgnseliidtacv
    tmadmlkeagyatgvvgkwhlglgpkggtdfnghitpnaqsigfdyefvipatvdrvpcv
    fvenghvvgldpndpitvnyehkvgdwptgeenpelvklkpsqghnntiingiprigwmt
    ggksalwkdediadiitnkaksfivshkeepfflymgtqdvhvprvphprfagksglgtr
    gdvilqldwtigeimntldslqltdntiliftsdngpviddgyqdqaferlnghtpmgiy
    rggkysayeagtripfivrwpakvkpnkqqalfsqidifaslaallkqplpedaapdsqe
    hlntllgkdytsreyivqqnlnntlaivkgqwkyiepsdapaieywtkmelgndrhpqly
    dlsadpseknnvakqhpevvrelsellesvktr
    

    Sequence, based on observed residues (ATOM records):
    >6s20C (C:)
    sqkpniiyifaddlgigdlscygatkvstphidrlagqgvqftnayatsatstpsrfgll
    tgmypwrqentgiapgnseliidtacvtmadmlkeagyatgvvgkwhlglgpkggtdfng
    hitpnaqsigfdyefvipatvdrvpcvfvenghvvgldpndpitvnyehkvgdwptgeen
    pelvklkpsqghnntiingiprigwmtggksalwkdediadiitnkaksfivshkeepff
    lymgtqdvhvprvphprfagksglgtrgdvilqldwtigeimntldslqltdntilifts
    dngpviddgyqdqaferlnghtpmgiyrggkysayeagtripfivrwpakvkpnkqqalf
    sqidifaslaallkqplpedaapdsqehlntllgkdytsreyivqqnlnntlaivkgqwk
    yiepsdapaieywtkmelgndrhpqlydlsadpseknnvakqhpevvrelsellesvktr