PDB entry 6rzb

View 6rzb on RCSB PDB site
Description: cryo-em structure of mouse cytoplasmic dynein-1 microtubule binding domain bound to microtubules
Deposited on 2019-06-13, released 2019-07-10
The last revision was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: EM
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tubulin alpha-1B chain
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2XVP4 (0-436)
      • conflict (339)
  • Chain 'B':
    Compound: Tubulin beta chain
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: MKIAA0325 protein
    Species: Mus musculus [TaxId:10090]
    Gene: Dync1h1, Dnchc1, mKIAA0325
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q80U36 (0-148)
      • engineered mutation (53)
      • engineered mutation (117)
  • Heterogens: GTP, MG, GDP, TA1

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rzbA (A:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktigggddsfntffsetgagk
    hvpravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvld
    rirkladqctglqgflvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvsta
    vvepynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrlisqivssita
    slrfdgalnvdltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepan
    qmvkcdprhgkymaccllyrgdvvpkdvnaaiatiktkrtiqfvdwcptgfkvginyqpp
    tvvpggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefse
    aredmaalekdyeevgv
    

    Sequence, based on observed residues (ATOM records):
    >6rzbA (A:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmsfntffsetgagkhvpravfvdle
    ptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvldrirkladqctg
    lqgflvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvstavvepynsiltt
    httlehsdcafmvdneaiydicrrnldierptytnlnrlisqivssitaslrfdgalnvd
    ltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepanqmvkcdprhgk
    ymaccllyrgdvvpkdvnaaiatiktkrtiqfvdwcptgfkvginyqpptvvpggdlakv
    qravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefsearedmaalekd
    yeevgv
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6rzbB (B:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneaagnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvvpspkvsdtvv
    epynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdaknmm
    aacdprhgryltvaavfrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprg
    lkmsatfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyq
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6rzbC (C:)
    adkqmsvkedldkvepavieaqnavksikkqhlvevrsmanppaavklalesialllges
    ttdwkqirsiimrenfiptivnfsaeeisdairekmkknymsnpsynyeivnraslaagp
    mvkwaiaqlnyadmlkrveplrnelqkle