PDB entry 6rxm

View 6rxm on RCSB PDB site
Description: crystal structure of cobb ac2 (a76g, i131c, v162g) in complex with h4k16-acetyl peptide
Deposited on 2019-06-08, released 2020-04-15
The last revision was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NAD-dependent protein deacylase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: cobB, ycfY, b1120, JW1106
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75960 (14-End)
      • engineered mutation (50)
      • engineered mutation (105)
      • engineered mutation (135)
  • Chain 'B':
    Compound: NAD-dependent protein deacylase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: cobB, ycfY, b1120, JW1106
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75960 (14-End)
      • engineered mutation (50)
      • engineered mutation (105)
      • engineered mutation (135)
  • Chain 'C':
    Compound: NAD-dependent protein deacylase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: cobB, ycfY, b1120, JW1106
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75960 (14-End)
      • engineered mutation (50)
      • engineered mutation (105)
      • engineered mutation (135)
  • Chain 'D':
    Compound: NAD-dependent protein deacylase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: cobB, ycfY, b1120, JW1106
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75960 (14-End)
      • engineered mutation (50)
      • engineered mutation (105)
      • engineered mutation (135)
  • Chain 'E':
    Compound: NAD-dependent protein deacylase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: cobB, ycfY, b1120, JW1106
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75960 (14-End)
      • engineered mutation (50)
      • engineered mutation (105)
      • engineered mutation (135)
  • Chain 'F':
    Compound: NAD-dependent protein deacylase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: cobB, ycfY, b1120, JW1106
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75960 (14-End)
      • engineered mutation (50)
      • engineered mutation (105)
      • engineered mutation (135)
  • Chain 'G':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ALY, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rxmA (A:)
mgsshhhhhhsqdpkprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdp
elvqafynarrrqlqqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvih
mhgellkvrcsqsgqaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymals
madifiaigtsghvypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpef
vekllkglkagsia

    Sequence, based on observed residues (ATOM records):
    >6rxmA (A:)
kprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdpelvqafynarrrql
qqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvihmhgellkvrcsqsg
qaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymalsmadifiaigtsghv
ypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpefvekllkglk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6rxmB (B:)
mgsshhhhhhsqdpkprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdp
elvqafynarrrqlqqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvih
mhgellkvrcsqsgqaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymals
madifiaigtsghvypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpef
vekllkglkagsia

    Sequence, based on observed residues (ATOM records):
    >6rxmB (B:)
kprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdpelvqafynarrrql
qqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvihmhgellkvrcsqsg
qaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymalsmadifiaigtsghv
ypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpefvekllkgl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rxmC (C:)
mgsshhhhhhsqdpkprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdp
elvqafynarrrqlqqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvih
mhgellkvrcsqsgqaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymals
madifiaigtsghvypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpef
vekllkglkagsia

    Sequence, based on observed residues (ATOM records):
    >6rxmC (C:)
kprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdpelvqafynarrrql
qqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvihmhgellkvrcsqsg
qaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymalsmadifiaigtsghv
ypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpefvekllkglk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6rxmD (D:)
mgsshhhhhhsqdpkprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdp
elvqafynarrrqlqqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvih
mhgellkvrcsqsgqaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymals
madifiaigtsghvypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpef
vekllkglkagsia

    Sequence, based on observed residues (ATOM records):
    >6rxmD (D:)
kprvlvltgagisaesgiglweehrvedvgtpegfdrdpelvqafynarrrqlqqpeiqp
naahlalaklqdalgdrfllvtqncdnlheragntnvihmhgellkvrcsqsgqaldwtg
dvtpedkchccqfpaplrphvvwfgemplgmdeiymalsmadifiaigtsghvypaagfv
heaklhgahtvelnlepsqvgnefaekyygpasqvvpefvekllkgl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6rxmE (E:)
mgsshhhhhhsqdpkprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdp
elvqafynarrrqlqqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvih
mhgellkvrcsqsgqaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymals
madifiaigtsghvypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpef
vekllkglkagsia

    Sequence, based on observed residues (ATOM records):
    >6rxmE (E:)
kprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdpelvqafynarrrql
qqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvihmhgellkvrcsqsg
qaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymalsmadifiaigtsghv
ypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpefvekllkg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6rxmF (F:)
mgsshhhhhhsqdpkprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdp
elvqafynarrrqlqqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvih
mhgellkvrcsqsgqaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymals
madifiaigtsghvypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpef
vekllkglkagsia

    Sequence, based on observed residues (ATOM records):
    >6rxmF (F:)
kprvlvltgagisaesgirtfraadglweehrvedvgtpegfdrdpelvqafynarrrql
qqpeiqpnaahlalaklqdalgdrfllvtqncdnlheragntnvihmhgellkvrcsqsg
qaldwtgdvtpedkchccqfpaplrphvvwfgemplgmdeiymalsmadifiaigtsghv
ypaagfvheaklhgahtvelnlepsqvgnefaekyygpasqvvpefvekllkg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6rxmG (G:)
kggakrhrkil

    Sequence, based on observed residues (ATOM records):
    >6rxmG (G:)
ggakrhr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6rxmH (H:)
kggakrhrkil

    Sequence, based on observed residues (ATOM records):
    >6rxmH (H:)
ggakrhr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6rxmI (I:)
kggakrhrkil

    Sequence, based on observed residues (ATOM records):
    >6rxmI (I:)
ggakrhr

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6rxmJ (J:)
kggakrhrkil

    Sequence, based on observed residues (ATOM records):
    >6rxmJ (J:)
ggakrhrk

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6rxmK (K:)
kggakrhrkil

    Sequence, based on observed residues (ATOM records):
    >6rxmK (K:)
ggakrhrki

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6rxmL (L:)
kggakrhrkil