PDB entry 6rud

View 6rud on RCSB PDB site
Description: wolinella succinogenes l-asparaginase p1
Class: hydrolase
Keywords: hydrolase
Deposited on 2019-05-28, released 2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-asparaginase
    Species: Wolinella succinogenes [TaxId:844]
    Gene: ansA, ansB, WS0660
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50286 (0-327)
      • conflict (118)
    Domains in SCOPe 2.08: d6ruda_
  • Chain 'B':
    Compound: L-asparaginase
    Species: Wolinella succinogenes [TaxId:844]
    Gene: ansA, ansB, WS0660
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50286 (0-327)
      • conflict (118)
    Domains in SCOPe 2.08: d6rudb_
  • Chain 'C':
    Compound: L-asparaginase
    Species: Wolinella succinogenes [TaxId:844]
    Gene: ansA, ansB, WS0660
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50286 (0-327)
      • conflict (118)
    Domains in SCOPe 2.08: d6rudc_
  • Chain 'D':
    Compound: L-asparaginase
    Species: Wolinella succinogenes [TaxId:844]
    Gene: ansA, ansB, WS0660
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50286 (0-327)
      • conflict (118)
    Domains in SCOPe 2.08: d6rudd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6rudA (A:)
kpqvtilatggtiagsgessvkssysagavtvdkllaavpaindlatikgeqissigsqe
mtgkvwlklakrvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpg
ssmsadgpmnlynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgk
igtvyygkveyftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakg
iihagmgngnpfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvatesln
pqkarvllmlaltktsdreaiqkifsty

    Sequence, based on observed residues (ATOM records): (download) 
    >6rudA (A:)
kpqvtilatggtiagsagavtvdkllaavpaindlatikgeqissigsqemtgkvwlkla
krvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpgssmsadgpmn
lynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgkigtvyygkve
yftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakgiihagmgngn
pfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvateslnpqkarvllml
altktsdreaiqkifsty

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6rudB (B:)
kpqvtilatggtiagsgessvkssysagavtvdkllaavpaindlatikgeqissigsqe
mtgkvwlklakrvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpg
ssmsadgpmnlynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgk
igtvyygkveyftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakg
iihagmgngnpfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvatesln
pqkarvllmlaltktsdreaiqkifsty

    Sequence, based on observed residues (ATOM records): (download) 
    >6rudB (B:)
kpqvtilatggtiagsgesagavtvdkllaavpaindlatikgeqissigsqemtgkvwl
klakrvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpgssmsadg
pmnlynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgkigtvyyg
kveyftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakgiihagmg
ngnpfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvateslnpqkarvl
lmlaltktsdreaiqkifsty

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6rudC (C:)
kpqvtilatggtiagsgessvkssysagavtvdkllaavpaindlatikgeqissigsqe
mtgkvwlklakrvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpg
ssmsadgpmnlynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgk
igtvyygkveyftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakg
iihagmgngnpfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvatesln
pqkarvllmlaltktsdreaiqkifsty

    Sequence, based on observed residues (ATOM records): (download) 
    >6rudC (C:)
kpqvtilatggtiagagavtvdkllaavpaindlatikgeqissigsqemtgkvwlklak
rvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpgssmsadgpmnl
ynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgkigtvyygkvey
ftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakgiihagmgngnp
fpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvateslnpqkarvllmla
ltktsdreaiqkifsty

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6rudD (D:)
kpqvtilatggtiagsgessvkssysagavtvdkllaavpaindlatikgeqissigsqe
mtgkvwlklakrvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpg
ssmsadgpmnlynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgk
igtvyygkveyftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakg
iihagmgngnpfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvatesln
pqkarvllmlaltktsdreaiqkifsty

    Sequence, based on observed residues (ATOM records): (download) 
    >6rudD (D:)
kpqvtilatggtiagsgagavtvdkllaavpaindlatikgeqissigsqemtgkvwlkl
akrvnellaqketeaviithgtdtmeetafflnltvksqkpvvlvgamrpgssmsadgpm
nlynavnvainkastnkgvvivmndeihaareatklnttavnafaspntgkigtvyygkv
eyftqsvrphtlasefdiskieelprvdilyahpddtdvlvnaalqagakgiihagmgng
npfpltqnalekaaksgvvvarssrvgsgsttqeaevddkklgfvateslnpqkarvllm
laltktsdreaiqkifsty