PDB entry 6rtg

View 6rtg on RCSB PDB site
Description: crystal structure of the udp-bound glycosyltransferase domain from the ygt toxin
Deposited on 2019-05-23, released 2020-03-18
The last revision was dated 2020-04-01, with a file datestamp of 2020-03-27.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RTX toxin and Ca2+-binding protein
    Species: Yersinia mollaretii (strain ATCC 43969 / DSM 18520 / CIP 103324 / CNY 7263 / WAIP 204) [TaxId:349967]
    Gene: ymoll0001_37990
    Database cross-references and differences (RAF-indexed):
  • Heterogens: UDP, MN, K, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rtgA (A:)
gsstdlpksnknnnfithnlhtvwiggplpditksylkvwrdinpdythitwidtdnkfv
alynnavkelreytlkqylvgdsnatandyydqavqiergvrenvylphgndieriktik
kiagslgdnkvqeyrtkietiessfvemidgqqghyqhvsalfeqfsemdnlratalkqi
yereindrgnlaaasdilrlvalqtqggvyidtdllphidwdliestklflmndnnsver
vyskeiyleiekykqltgsktnkirsgltksqineiqrlteennlfkhlnelekncfysd
nsvrgwtnamlacnenngfmnalmdriilnytildefiisnivtdgemlnftekmsaqfg
lnaehegsfipslanyykdsivpnspqatatlfmtgptvldtvirveeavrrgivkkeai
aslytveetfsswsisqfydkaafyldkvkfdislnsaeegilrdscfdviqqskeqath
lpdiaikfleslnnftwkqlellikasefsdqyktlatlad

    Sequence, based on observed residues (ATOM records):
    >6rtgA (A:)
nnfithnlhtvwiggplpditksylkvwrdinpdythitwidtdnkfvalynnavkelre
ytlkqylvgdsnatandyydqavqiergvrenvylphgndieriktikkiagslgdnkvq
eyrtkietiessfvemidgghyqhvsalfeqfsemdnlratalkqiyereindrgnlaaa
sdilrlvalqtqggvyidtdllphidwdliestklfldnnsvervyskeiyleiekykql
tgsktnkirsgltksqineiqrlteennlfkhlnelekncfysdnsvrgwtnamlacnen
ngfmnalmdriilnytildefiisnivtdgemlnftekmsaqfglnaehegsfipslany
ykdsivpnspqatatlfmtgptvldtvirveeavrrgivkkeaiaslytveetfsswsis
qfydkaafyldkvkfdislnsaeegilrdscfdviqqskeqathlpdiaikfleslnnft
wkqlellikasefsdqyktlatl