PDB entry 6rpn

View 6rpn on RCSB PDB site
Description: Structure of metallo beta lactamase VIM-2 with cyclic boronate APC308.
Class: antimicrobial protein
Keywords: beta lactamases, antimicrobial resistance, cyclic boronate, ANTIMICROBIAL PROTEIN
Deposited on 2019-05-14, released 2020-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: XRAY
Resolution: 1.41 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-lactamase vim-2
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: blaVIM-2, bla vim-2, bla-VIM-2, blasVIM-2, blaVIM2, blm, VIM-2, vim-2, PAERUG_P32_London_17_VIM_2_10_11_06255
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6rpna_
  • Chain 'B':
    Compound: beta-lactamase vim-2
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: blaVIM-2, bla vim-2, bla-VIM-2, blasVIM-2, blaVIM2, blm, VIM-2, vim-2, PAERUG_P32_London_17_VIM_2_10_11_06255
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6rpnb_
  • Heterogens: KDZ, KL8, ZN, CL, MG, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6rpnA (A:)
gpvdssgeyptvseipvgevrlyqiadgvwshiatqsfdgavypsnglivrdgdelllid
tawgakntaallaeiekqiglpvtravsthfhddrvggvdvlraagvatyaspstrrlae
vegneipthsleglsssgdavrfgpvelfypgaahstdnlvvyvpsasvlyggcaiyels
rtsagnvadadlaewptsieriqqhypeaqfvipghglpggldllkhttnvvkahtnrsv
ve

    Sequence, based on observed residues (ATOM records): (download) 
    >6rpnA (A:)
geyptvseipvgevrlyqiadgvwshiatqsfdgavypsnglivrdgdelllidtawgak
ntaallaeiekqiglpvtravsthfhddrvggvdvlraagvatyaspstrrlaevegnei
pthsleglsssgdavrfgpvelfypgaahstdnlvvyvpsasvlyggcaiyelsrtsagn
vadadlaewptsieriqqhypeaqfvipghglpggldllkhttnvvkahtnrs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6rpnB (B:)
gpvdssgeyptvseipvgevrlyqiadgvwshiatqsfdgavypsnglivrdgdelllid
tawgakntaallaeiekqiglpvtravsthfhddrvggvdvlraagvatyaspstrrlae
vegneipthsleglsssgdavrfgpvelfypgaahstdnlvvyvpsasvlyggcaiyels
rtsagnvadadlaewptsieriqqhypeaqfvipghglpggldllkhttnvvkahtnrsv
ve

    Sequence, based on observed residues (ATOM records): (download) 
    >6rpnB (B:)
geyptvseipvgevrlyqiadgvwshiatqsfdgavypsnglivrdgdelllidtawgak
ntaallaeiekqiglpvtravsthfhddrvggvdvlraagvatyaspstrrlaevegnei
pthsleglsssgdavrfgpvelfypgaahstdnlvvyvpsasvlyggcaiyelsrtsagn
vadadlaewptsieriqqhypeaqfvipghglpggldllkhttnvvkahtnrs