PDB entry 6rmu

View 6rmu on RCSB PDB site
Description: Crystal structure of disulphide-linked human C3d dimer in complex with Staphylococcus aureus complement subversion protein Sbi-IV
Class: immune system
Keywords: Complement, innate immunity, domain swap, Staphylococcus aureus, IMMUNE SYSTEM
Deposited on 2019-05-07, released 2020-11-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Complement C3
    Species: Homo sapiens [TaxId:9606]
    Gene: C3, CPAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01024 (2-End)
      • initiating methionine (0)
      • expression tag (1)
    Domains in SCOPe 2.08: d6rmua_
  • Chain 'B':
    Compound: Complement C3
    Species: Homo sapiens [TaxId:9606]
    Gene: C3, CPAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01024 (2-End)
      • initiating methionine (0)
      • expression tag (1)
    Domains in SCOPe 2.08: d6rmub_
  • Chain 'C':
    Compound: Immunoglobulin-binding protein Sbi
    Species: Staphylococcus aureus subsp. aureus Mu50 [TaxId:158878]
    Gene: sbi, SAV2418
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Immunoglobulin-binding protein Sbi
    Species: Staphylococcus aureus subsp. aureus Mu50 [TaxId:158878]
    Gene: sbi, SAV2418
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PEG, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6rmuA (A:)
mldaerlkhlivtpsgcgeqnmigmtptviavhyldeteqwekfglekrqgalelikkgy
tqqlafrqpssafaafvkrapstwltayvvkvfslavnliaidsqvlcgavkwlilekqk
pdgvfqedapvihqemigglrnnnekdmaltafvlislqeakdiceeqvnslpgsitkag
dfleanymnlqrsytvaiagyalaqmgrlkgpllnkflttakdknrwedpgkqlynveat
syallallqlkdfdfvppvvrwlneqryygggygstqatfmvfqalaqyqkdapdhqeln
ldvslqlpsr

    Sequence, based on observed residues (ATOM records): (download) 
    >6rmuA (A:)
mldaerlkhlivtpsgcgeqnmigmtptviavhyldeteqwekfglekrqgalelikkgy
tqqlafrqpssafaafvkrapstwltayvvkvfslavnliaidsqvlcgavkwlilekqk
pdgvfqedapvihqemigglrnnnekdmaltafvlislqeakdiceeqvnslpgsitkag
dfleanymnlqrsytvaiagyalaqmgrlkgpllnkflttakdknrwedpgkqlynveat
syallallqlkdfdfvppvvrwlneqryygggygstqatfmvfqalaqyqkdapdhqel

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6rmuB (B:)
mldaerlkhlivtpsgcgeqnmigmtptviavhyldeteqwekfglekrqgalelikkgy
tqqlafrqpssafaafvkrapstwltayvvkvfslavnliaidsqvlcgavkwlilekqk
pdgvfqedapvihqemigglrnnnekdmaltafvlislqeakdiceeqvnslpgsitkag
dfleanymnlqrsytvaiagyalaqmgrlkgpllnkflttakdknrwedpgkqlynveat
syallallqlkdfdfvppvvrwlneqryygggygstqatfmvfqalaqyqkdapdhqeln
ldvslqlpsr

    Sequence, based on observed residues (ATOM records): (download) 
    >6rmuB (B:)
mldaerlkhlivtpsgcgeqnmigmtptviavhyldeteqwekfglekrqgalelikkgy
tqqlafrqpssafaafvkrapstwltayvvkvfslavnliaidsqvlcgavkwlilekqk
pdgvfqedapvihqemigglrnnnekdmaltafvlislqeakdiceeqvnslpgsitkag
dfleanymnlqrsytvaiagyalaqmgrlkgpllnkflttakdknrwedpgkqlynveat
syallallqlkdfdfvppvvrwlneqryygggygstqatfmvfqalaqyqkdapdhqeln

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.