PDB entry 6rlc

View 6rlc on RCSB PDB site
Description: crystal structure of the pdz tandem of syntenin in complex with fragment f13
Deposited on 2019-05-02, released 2021-02-03
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-165)
      • expression tag (3-4)
  • Chain 'B':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-End)
      • expression tag (3-4)
  • Chain 'C':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-165)
      • expression tag (3-4)
  • Chain 'D':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-End)
      • expression tag (2-4)
  • Heterogens: K7Z, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rlcA (A:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6rlcA (A:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpaf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6rlcB (B:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6rlcB (B:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rlcC (C:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6rlcC (C:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpaf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6rlcD (D:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6rlcD (D:)
mdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagw
ssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaar
nglltehniceingqnviglkdsqiadilstsgtvvtitimpa