PDB entry 6rkw

View 6rkw on RCSB PDB site
Description: cryoem structure of the complete e. coli dna gyrase complex bound to a 130 bp dna duplex
Deposited on 2019-04-30, released 2019-11-06
The last revision was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: EM
Resolution: 6.6 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA gyrase subunit A
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gyrA, hisW, nalA, parD, b2231, JW2225
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA gyrase subunit b
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gyrB, acrB, cou, himB, hisU, nalC, parA, pcbA, b3699, JW5625
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA gyrase subunit A
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gyrA, hisW, nalA, parD, b2231, JW2225
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA gyrase subunit b
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gyrB, acrB, cou, himB, hisU, nalC, parA, pcbA, b3699, JW5625
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (58-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'F':
    Compound: DNA (58-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'G':
    Compound: DNA (62-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'H':
    Compound: DNA (62-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: ANP, JHN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rkwA (A:)
msdlareitpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwn
kaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaam
ryteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmat
nipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkv
yiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdg
mrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrre
vvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnv
aamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeyke
lldqiaellrilgsadrlmevireelelvreqfgdkrrteitansadinledlitqedvv
vtlshqgyvkyqplseyeaqrrggkgksaarikeedfidrllvanthdhilcfssrgrvy
smkvyqlpeatrgargrpivnllpleqderitailpvtefeegvkvfmatangtvkktvl
tefnrlrtagkvaiklvdgdeligvdltsgedevmlfsaegkvvrfkessvramgcnttg
vrgirlgegdkvvslivprgdgailtatqngygkrtavaeyptksratkgvisikvtern
glvvgavqvddcdqimmitdagtlvrtrvseisivgrntqgvilirtaedenvvglqrva
epvdeedldtidgsaaegddeiapevdvddepeee

    Sequence, based on observed residues (ATOM records):
    >6rkwA (A:)
itpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksa
rvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirl
akiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnl
tevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyirarae
vevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmriviev
krdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrti
felrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaaagdda
arpewlepefgvglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilg
sadrlmevireelelvreqfgdkrrteitansadinledlitqedvvvtlshqgyvkyqp
lseyeaqrrggkgksaarikeedfidrllvanthdhilcfssrgrvysmkvyqlpeatrg
argrpivnllpleqderitailpvtefeegvkvfmatangtvkktvltefnrlrtagkva
iklvdgdeligvdltsgedevmlfsaegkvvrfkessvramgcnttgvrgirlgegdkvv
slivprgdgailtatqngygkrtavaeyptksratkgvisikvternglvvgavqvddcd
qimmitdagtlvrtrvseisivgrntqgvilirtaedenvvglqrvae

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6rkwB (B:)
msnsydsssikvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeii
vtihadnsvsvqddgrgiptgihpeegvsaaevimtvlhaggkfddnsykvsgglhgvgv
svvnalsqklelviqregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvt
efeyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpni
fyfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdke
gyskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaey
llenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalsel
ylvegdsaggsakqgrnrknqailplkgkilnvekarfdkmlssqevatlitalgcgigr
deynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkg
kqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerr
ypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlf
epivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfe
qaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttl
mgdaveprrafieenalkaanidi

    Sequence, based on observed residues (ATOM records):
    >6rkwB (B:)
snsydsssikvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiiv
tihadnsvsvqddgrgiptgihpeegvsaaevimtvlhaggkfddnsykvsgglhgvgvs
vvnalsqklelviqregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvte
feyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpnif
yfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdkeg
yskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaeyl
lenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalsely
lvegdsaggsakqgrnrknqailplkgkilnvekarfdkmlssqevatlitalynpdklr
yhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikdd
eamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkel
iyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrth
gvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvke
srrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprr
a

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rkwC (C:)
msdlareitpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwn
kaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaam
ryteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmat
nipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkv
yiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdg
mrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrre
vvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnv
aamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeyke
lldqiaellrilgsadrlmevireelelvreqfgdkrrteitansadinledlitqedvv
vtlshqgyvkyqplseyeaqrrggkgksaarikeedfidrllvanthdhilcfssrgrvy
smkvyqlpeatrgargrpivnllpleqderitailpvtefeegvkvfmatangtvkktvl
tefnrlrtagkvaiklvdgdeligvdltsgedevmlfsaegkvvrfkessvramgcnttg
vrgirlgegdkvvslivprgdgailtatqngygkrtavaeyptksratkgvisikvtern
glvvgavqvddcdqimmitdagtlvrtrvseisivgrntqgvilirtaedenvvglqrva
epvdeedldtidgsaaegddeiapevdvddepeee

    Sequence, based on observed residues (ATOM records):
    >6rkwC (C:)
itpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksa
rvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirl
akiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnl
tevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyirarae
vevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmriviev
krdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrti
felrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaaagdda
arpewlepefgvglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilg
sadrlmevireelelvreqfgdkrrteitansadinledlitqedvvvtlshqgyvkyqp
lseyeaqrrggkgksaarikeedfidrllvanthdhilcfssrgrvysmkvyqlpeatrg
argrpivnllpleqderitailpvtefeegvkvfmatangtvkktvltefnrlrtagkva
iklvdgdeligvdltsgedevmlfsaegkvvrfkessvramgcnttgvrgirlgegdkvv
slivprgdgailtatqngygkrtavaeyptksratkgvisikvternglvvgavqvddcd
qimmitdagtlvrtrvseisivgrntqgvilirtaedenvvglqrvae

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6rkwD (D:)
msnsydsssikvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeii
vtihadnsvsvqddgrgiptgihpeegvsaaevimtvlhaggkfddnsykvsgglhgvgv
svvnalsqklelviqregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvt
efeyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpni
fyfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdke
gyskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaey
llenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalsel
ylvegdsaggsakqgrnrknqailplkgkilnvekarfdkmlssqevatlitalgcgigr
deynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkg
kqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerr
ypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlf
epivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfe
qaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttl
mgdaveprrafieenalkaanidi

    Sequence, based on observed residues (ATOM records):
    >6rkwD (D:)
snsydsssikvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiiv
tihadnsvsvqddgrgiptgihpeegvsaaevimtvlhaggkfddnsykvsgglhgvgvs
vvnalsqklelviqregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvte
feyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpnif
yfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdkeg
yskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaeyl
lenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalsely
lvegdsaggsakqgrnrknqailplkgkilnvekarfdkmlssqevatlitalynpdklr
yhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikdd
eamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkel
iyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrth
gvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvke
srrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprr
a

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.