PDB entry 6rkf

View 6rkf on RCSB PDB site
Description: structure of human daspo
Deposited on 2019-04-30, released 2020-03-11
The last revision was dated 2020-03-11, with a file datestamp of 2020-03-06.
Experiment type: XRAY
Resolution: 3.22 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-aspartate oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: DDO
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99489 (9-End)
      • engineered mutation (149)
      • engineered mutation (151)
  • Chain 'B':
    Compound: D-aspartate oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: DDO
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99489
      • engineered mutation (149)
      • engineered mutation (151)
  • Chain 'C':
    Compound: D-aspartate oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: DDO
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99489 (9-End)
      • engineered mutation (149)
      • engineered mutation (151)
  • Chain 'D':
    Compound: D-aspartate oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: DDO
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99489
      • engineered mutation (149)
      • engineered mutation (151)
  • Chain 'E':
    Compound: D-aspartate oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: DDO
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99489
      • engineered mutation (149)
      • engineered mutation (151)
  • Chain 'F':
    Compound: D-aspartate oxidase
    Species: Homo sapiens [TaxId:9606]
    Gene: DDO
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99489
      • engineered mutation (149)
      • engineered mutation (151)
  • Heterogens: FAD, GOL, TRS, PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rkfA (A:)
mhhhhhhasmdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagml
iphtypdtpihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwad
vvlgfrkmteaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwe
lhpsfdivvncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshv
tlggtrqkgdwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtell
ardgqrlpvvhhyghgsggisvhwgtaleaarlvsecvhalrtpipksnl

    Sequence, based on observed residues (ATOM records):
    >6rkfA (A:)
mdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagmliphtypdtp
ihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwadvvlgfrkmt
eaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwelhpsfdivv
ncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshvtlggtrqkg
dwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtellardgqrlpv
vhhyghgsggisvhwgtaleaarlvsecvhalrtp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6rkfB (B:)
mhhhhhhasmdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagml
iphtypdtpihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwad
vvlgfrkmteaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwe
lhpsfdivvncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshv
tlggtrqkgdwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtell
ardgqrlpvvhhyghgsggisvhwgtaleaarlvsecvhalrtpipksnl

    Sequence, based on observed residues (ATOM records):
    >6rkfB (B:)
dtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagmliphtypdtpi
htqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwadvvlgfrkmte
aelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwelhpsfdivvn
csglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshvtlggtrqkgd
wnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtellardgqrlpvv
hhyghgsggisvhwgtaleaarlvsecvhalrtp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rkfC (C:)
mhhhhhhasmdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagml
iphtypdtpihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwad
vvlgfrkmteaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwe
lhpsfdivvncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshv
tlggtrqkgdwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtell
ardgqrlpvvhhyghgsggisvhwgtaleaarlvsecvhalrtpipksnl

    Sequence, based on observed residues (ATOM records):
    >6rkfC (C:)
mdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagmliphtypdtp
ihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwadvvlgfrkmt
eaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwelhpsfdivv
ncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshvtlggtrqkg
dwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtellardgqrlpv
vhhyghgsggisvhwgtaleaarlvsecvhalrtp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6rkfD (D:)
mhhhhhhasmdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagml
iphtypdtpihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwad
vvlgfrkmteaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwe
lhpsfdivvncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshv
tlggtrqkgdwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtell
ardgqrlpvvhhyghgsggisvhwgtaleaarlvsecvhalrtpipksnl

    Sequence, based on observed residues (ATOM records):
    >6rkfD (D:)
tariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagmliphtypdtpih
tqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwadvvlgfrkmtea
elkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwelhpsfdivvnc
sglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshvtlggtrqkgdw
nlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtellardgqrlpvvh
hyghgsggisvhwgtaleaarlvsecvhalrtp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6rkfE (E:)
mhhhhhhasmdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagml
iphtypdtpihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwad
vvlgfrkmteaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwe
lhpsfdivvncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshv
tlggtrqkgdwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtell
ardgqrlpvvhhyghgsggisvhwgtaleaarlvsecvhalrtpipksnl

    Sequence, based on observed residues (ATOM records):
    >6rkfE (E:)
tariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagmliphtypdtpih
tqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwadvvlgfrkmtea
elkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwelhpsfdivvnc
sglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshvtlggtrqkgdw
nlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtellardgqrlpvvh
hyghgsggisvhwgtaleaarlvsecvhalrtp

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6rkfF (F:)
mhhhhhhasmdtariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagml
iphtypdtpihtqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwad
vvlgfrkmteaelkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwe
lhpsfdivvncsglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshv
tlggtrqkgdwnlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtell
ardgqrlpvvhhyghgsggisvhwgtaleaarlvsecvhalrtpipksnl

    Sequence, based on observed residues (ATOM records):
    >6rkfF (F:)
tariavvgagvvglstavcisklvprcsvtiisdkftpdttsdvaagmliphtypdtpih
tqkqwfretfnhlfaiansaeagdagvhlvsgwqifqstpteevpfwadvvlgfrkmtea
elkkfpqyvfgqafttlkyegpaylpwlekrikgsggwtltrriedlwelhpsfdivvnc
sglgsrqlagdskifpvrgqvlqvqapwvehfirdgsgltyiypgtshvtlggtrqkgdw
nlspdaensreilsrccalepslhgacnirekvglrpyrpgvrlqtellardgqrlpvvh
hyghgsggisvhwgtaleaarlvsecvhalrtp