PDB entry 6rjg

View 6rjg on RCSB PDB site
Description: cryo-em structure of st1cas9-sgrna-acriia6-tdna59-ntpam complex.
Deposited on 2019-04-26, released 2019-10-02
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AcrIIa6
    Species: Streptococcus phage D1811 [TaxId:2108111]
    Gene: D1811_026
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: AcrIIa6
    Species: Streptococcus phage D1811 [TaxId:2108111]
    Gene: D1811_026
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Cas 9
    Species: Streptococcus thermophilus DGCC 7710 [TaxId:1268061]
    Gene: cas9, CDA68_00396
    Database cross-references and differences (RAF-indexed):
    • PDB 6RJG (Start-1120)
  • Chain 'D':
    Compound: sgrna
    Species: Streptococcus thermophilus [TaxId:1308]
  • Chain 'E':
    Compound: tDNA59
    Species: Streptococcus virus 2972, synthetic [TaxId:306323]
  • Chain 'G':
    Compound: ntPAM
    Species: Streptococcus virus 2972, synthetic [TaxId:306323]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6rjgA (A:)
    mkinddikelileymsryfkfendfyklpgikftdanwqkfknggtdiekmgaarvnaml
    dclfddfelamigkaqtnyyndnslkmnmpfytyydmfkkqqllkwlknnrddviggtgr
    mytasgnyianaylevalessslgsgsymlqmrfkdyskgqepipsgrqnrlewiennle
    nir
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6rjgB (B:)
    mkinddikelileymsryfkfendfyklpgikftdanwqkfknggtdiekmgaarvnaml
    dclfddfelamigkaqtnyyndnslkmnmpfytyydmfkkqqllkwlknnrddviggtgr
    mytasgnyianaylevalessslgsgsymlqmrfkdyskgqepipsgrqnrlewiennle
    nir
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rjgC (C:)
    msdlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkk
    hrrvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisy
    lddasddgnssigdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrl
    invfptsayrsealrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygr
    yrtsgetldnifgiligkctfypdefraakasytaqefnllndlnnltvptetkklskeq
    knqiinyvknekamgpaklfkyiakllscdvadikgyridksgkaeihtfeayrkmktle
    tldieqmdretldklayvltlnteregiqealehefadgsfsqkqvdelvqfrkanssif
    gkgwhnfsvklmmelipelyetseeqmtiltrlgkqkttsssnktkyidekllteeiynp
    vvaksvrqaikivnaaikeygdfdniviemaretneddekkaiqkiqkankdekdaamlk
    aanqyngkaelphsvfhghkqlatkirlwhqqgerclytgktisihdlinnsnqfevdhi
    lplsitfddslankvlvyatanqekgqrtpyqaldsmddawsfrelkafvresktlsnkk
    keyllteediskfdvrkkfiernlvdtryasrvvlnalqehfrahkidtkvsvvrgqfts
    qlrrhwgiektrdtyhhhavdaliiaassqlnlwkkqkntlvsysedqlldietgelisd
    deykesvfkapyqhfvdtlkskefedsilfsyqvdskfnrkisdatiyatrqakvgkdka
    detyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepilenypnkqine
    kgkevpcnpflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlq
    svspwradvyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefk
    ftlykndlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnva
    nsgqckkglgksnisiykvrtdvlgnqhiiknegdkpkldf
    

    Sequence, based on observed residues (ATOM records):
    >6rjgC (C:)
    dlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkkhr
    rvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisylg
    dyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrlinvfptsayrsea
    lrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygryrtsgetldnifg
    iligkctfypdefraakasytaqefnllndlnnllskeqknqiinyvknekamgpaklfk
    yiakllscdvadikgyridksgkaeihtfeayrkmktletldieqmdretldklayvltl
    nteregiqealehefadgsfsqkqvdelvqfrkanssifgkgwhnfsvklmmelipelye
    tseeqmtiltrlgkqkttsssnktkyidekllteeiynpvvaksvrqaikivnaaikeyg
    dfdnivieasrvvlnalqehfrahkidtkvsvvedsilfsyqvdskfnrkisdatiyatr
    qakvgkdkadetyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepile
    npflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlqsvspwra
    dvyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefkftlyknd
    lllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnvansgqckk
    glgksnisiykvrtdvlgnqhiiknegdkpkldf
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'G':
    No sequence available.