PDB entry 6rjd

View 6rjd on RCSB PDB site
Description: cryo-em structure of st1cas9-sgrna-tdna59-ntpam complex.
Deposited on 2019-04-26, released 2019-10-02
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: Streptococcus Thermophilus 1 Cas9
    Species: Streptococcus thermophilus DGCC 7710 [TaxId:1268061]
    Gene: cas9, CDA68_00396
    Database cross-references and differences (RAF-indexed):
    • PDB 6RJD (Start-1120)
  • Chain 'D':
    Compound: sgRNA (78-MER)
    Species: Streptococcus thermophilus DGCC 7710 [TaxId:1268061]
  • Chain 'E':
    Compound: tDNA59
    Species: Streptococcus phage D1811, synthetic [TaxId:2108111]
  • Chain 'G':
    Compound: ntPAM
    Species: Streptococcus Phage 2972, synthetic [TaxId:306323]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rjdC (C:)
msdlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkk
hrrvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisy
lddasddgnssigdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrl
invfptsayrsealrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygr
yrtsgetldnifgiligkctfypdefraakasytaqefnllndlnnltvptetkklskeq
knqiinyvknekamgpaklfkyiakllscdvadikgyridksgkaeihtfeayrkmktle
tldieqmdretldklayvltlnteregiqealehefadgsfsqkqvdelvqfrkanssif
gkgwhnfsvklmmelipelyetseeqmtiltrlgkqkttsssnktkyidekllteeiynp
vvaksvrqaikivnaaikeygdfdniviemaretneddekkaiqkiqkankdekdaamlk
aanqyngkaelphsvfhghkqlatkirlwhqqgerclytgktisihdlinnsnqfevdhi
lplsitfddslankvlvyatanqekgqrtpyqaldsmddawsfrelkafvresktlsnkk
keyllteediskfdvrkkfiernlvdtryasrvvlnalqehfrahkidtkvsvvrgqfts
qlrrhwgiektrdtyhhhavdaliiaassqlnlwkkqkntlvsysedqlldietgelisd
deykesvfkapyqhfvdtlkskefedsilfsyqvdskfnrkisdatiyatrqakvgkdka
detyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepilenypnkqine
kgkevpcnpflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlq
svspwradvyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefk
ftlykndlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnva
nsgqckkglgksnisiykvrtdvlgnqhiiknegdkpkldf

    Sequence, based on observed residues (ATOM records):
    >6rjdC (C:)
dlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkkhr
rvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisyld
gdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrlinvfptsayrse
alrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygryrtsgetldnif
giligkctfypdefraakasytaqefnllndlnnltvlskeqknqiinyvknekamgpak
lfkyiakllscdvadikgyridksgkaeihtfeayrkmktletldieqmdretldklayv
ltlnteregiqealehefadgsfsqkqvdelvqfrkanssifgkgwhnfsvklmmelipe
lyetseeqmtiltrlgkqkttsssnktkyidekllteeiynpvvaksvrqaikivnaaik
eygdfdniviemasrvvlnalqehfrahkidtkvsvhhhavdaliiaassedsilfsyqv
dskfnrkisdatiyatrqakvgkdkadetyvlgkikdiytqdgydafmkiykkdkskflm
yrhdpqtfekviepilenpflkykeehgyirkyskkgngpeikslkyydsklgnhiditp
kdsnnkvvlqsvspwradvyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkk
egvdsdsefkftlykndlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfegge
alikvlgnvansgqckkglgksnisiykvrtdvlgnqhiiknegdkpkldf

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'G':
    No sequence available.