PDB entry 6rja

View 6rja on RCSB PDB site
Description: cryo-em structure of st1cas9-sgrna-tdna20-acriia6 dimeric assembly.
Deposited on 2019-04-26, released 2019-10-02
The last revision was dated 2021-06-30, with a file datestamp of 2021-06-25.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AcrIIa6
    Species: Streptococcus phage D1811 [TaxId:2108111]
    Gene: D1811_026
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: AcrIIa6
    Species: Streptococcus phage D1811 [TaxId:2108111]
    Gene: D1811_026
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: CRISPR-associated endonuclease Cas9 1
    Species: Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) [TaxId:322159]
    Gene: cas9-1, csn1, STER_0709
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03LF7 (Start-1120)
      • conflict (55)
  • Chain 'D':
    Compound: RNA (78-mer)
    Species: Streptococcus thermophilus [TaxId:1308]
  • Chain 'E':
    Compound: tDNA20
    Species: Streptococcus virus 2972, synthetic [TaxId:306323]
  • Chain 'F':
    Compound: CRISPR-associated endonuclease Cas9 1
    Species: Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) [TaxId:322159]
    Gene: cas9-1, csn1, STER_0709
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03LF7 (Start-1120)
      • conflict (55)
  • Chain 'G':
    Compound: RNA (78-mer)
    Species: Streptococcus thermophilus [TaxId:1308]
  • Chain 'H':
    Compound: tDNA20
    Species: Streptococcus virus 2972, synthetic [TaxId:306323]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6rjaA (A:)
    mkinddikelileymsryfkfendfyklpgikftdanwqkfknggtdiekmgaarvnaml
    dclfddfelamigkaqtnyyndnslkmnmpfytyydmfkkqqllkwlknnrddviggtgr
    mytasgnyianaylevalessslgsgsymlqmrfkdyskgqepipsgrqnrlewiennle
    nir
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6rjaB (B:)
    mkinddikelileymsryfkfendfyklpgikftdanwqkfknggtdiekmgaarvnaml
    dclfddfelamigkaqtnyyndnslkmnmpfytyydmfkkqqllkwlknnrddviggtgr
    mytasgnyianaylevalessslgsgsymlqmrfkdyskgqepipsgrqnrlewiennle
    nir
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rjaC (C:)
    msdlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkk
    hrrvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisy
    lddasddgnssigdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrl
    invfptsayrsealrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygr
    yrtsgetldnifgiligkctfypdefraakasytaqefnllndlnnltvptetkklskeq
    knqiinyvknekamgpaklfkyiakllscdvadikgyridksgkaeihtfeayrkmktle
    tldieqmdretldklayvltlnteregiqealehefadgsfsqkqvdelvqfrkanssif
    gkgwhnfsvklmmelipelyetseeqmtiltrlgkqkttsssnktkyidekllteeiynp
    vvaksvrqaikivnaaikeygdfdniviemaretneddekkaiqkiqkankdekdaamlk
    aanqyngkaelphsvfhghkqlatkirlwhqqgerclytgktisihdlinnsnqfevdhi
    lplsitfddslankvlvyatanqekgqrtpyqaldsmddawsfrelkafvresktlsnkk
    keyllteediskfdvrkkfiernlvdtryasrvvlnalqehfrahkidtkvsvvrgqfts
    qlrrhwgiektrdtyhhhavdaliiaassqlnlwkkqkntlvsysedqlldietgelisd
    deykesvfkapyqhfvdtlkskefedsilfsyqvdskfnrkisdatiyatrqakvgkdka
    detyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepilenypnkqine
    kgkevpcnpflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlq
    svspwradvyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefk
    ftlykndlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnva
    nsgqckkglgksnisiykvrtdvlgnqhiiknegdkpkldf
    

    Sequence, based on observed residues (ATOM records):
    >6rjaC (C:)
    dlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkkhr
    rvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisyld
    gdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrlinvfptsayrse
    alrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygryrtsgetldnif
    giligkctfypdefraakasytaqefnllndlnnskeqknqiinyvknekamgpaklfky
    iakllscdvadikgyridksgkaeihtfeayrkmktletldieqmdretldklayvltln
    teregiqealehefadgsfsqkqvdelvqfrkanssifgkgwhnfsvklmmelipelyet
    seeqmtiltrlgktkyidekllteeiynpvvaksvrqaikivnaaikeygdfdniviesr
    vvlnalqehfrahkidtkvsvhhhavdaliiaassdsilfsyqvdskfnrkisdatiyat
    rqakvgkdkadetyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepil
    enpflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlqsvspwr
    advyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefkftlykn
    dlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnvansgqck
    kglgksnisiykvrtdvlgnqhiiknegdkpkldf
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6rjaF (F:)
    msdlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkk
    hrrvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisy
    lddasddgnssigdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrl
    invfptsayrsealrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygr
    yrtsgetldnifgiligkctfypdefraakasytaqefnllndlnnltvptetkklskeq
    knqiinyvknekamgpaklfkyiakllscdvadikgyridksgkaeihtfeayrkmktle
    tldieqmdretldklayvltlnteregiqealehefadgsfsqkqvdelvqfrkanssif
    gkgwhnfsvklmmelipelyetseeqmtiltrlgkqkttsssnktkyidekllteeiynp
    vvaksvrqaikivnaaikeygdfdniviemaretneddekkaiqkiqkankdekdaamlk
    aanqyngkaelphsvfhghkqlatkirlwhqqgerclytgktisihdlinnsnqfevdhi
    lplsitfddslankvlvyatanqekgqrtpyqaldsmddawsfrelkafvresktlsnkk
    keyllteediskfdvrkkfiernlvdtryasrvvlnalqehfrahkidtkvsvvrgqfts
    qlrrhwgiektrdtyhhhavdaliiaassqlnlwkkqkntlvsysedqlldietgelisd
    deykesvfkapyqhfvdtlkskefedsilfsyqvdskfnrkisdatiyatrqakvgkdka
    detyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepilenypnkqine
    kgkevpcnpflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlq
    svspwradvyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefk
    ftlykndlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnva
    nsgqckkglgksnisiykvrtdvlgnqhiiknegdkpkldf
    

    Sequence, based on observed residues (ATOM records):
    >6rjaF (F:)
    dlvlgldigigsvgvgilnkvtgeiihknsrifpaaqaennlvrrtnrqgrrltrrkkhr
    rvrlnrlfeesglitdftkisinlnpyqlrvkgltdelsneelfialknmvkhrgisyld
    gdyaqivkenskqletktpgqiqleryqtygqlrgdftvekdgkkhrlinvfptsayrse
    alrilqtqqefnpqitdefinryleiltgkrkyyhgpgneksrtdygryrtsgetldnif
    giligkctfypdefraakasytaqefnllndlnnskeqknqiinyvknekamgpaklfky
    iakllscdvadikgyridksgkaeihtfeayrkmktletldieqmdretldklayvltln
    teregiqealehefadgsfsqkqvdelvqfrkanssifgkgwhnfsvklmmelipelyet
    seeqmtiltrlgktkyidekllteeiynpvvaksvrqaikivnaaikeygdfdniviesr
    vvlnalqehfrahkidtkvsvhhhavdaliiaassdsilfsyqvdskfnrkisdatiyat
    rqakvgkdkadetyvlgkikdiytqdgydafmkiykkdkskflmyrhdpqtfekviepil
    enpflkykeehgyirkyskkgngpeikslkyydsklgnhiditpkdsnnkvvlqsvspwr
    advyfnkttgkyeilglkyadlqfekgtgtykisqekyndikkkegvdsdsefkftlykn
    dlllvkdtetkeqqlfrflsrtmpkqkhyvelkpydkqkfeggealikvlgnvansgqck
    kglgksnisiykvrtdvlgnqhiiknegdkpkldf
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.